Showing : S4Vectors • reset
1
vote
4
replies
695
views
Is there a way to allow elements with no IRanges when subsetting an IRangesList
IRanges Biostrings S4Vectors
written 3 months ago by • 0
1
vote
1
reply
424
views
DataFrame Character Truncation
S4Vectors
updated 3 months ago by 67k • written 3 months ago by ★ 1.5k
0
votes
1
reply
330
views
Version 3.15 S4Vectors packages are missing
S4Vectors
updated 9 months ago by 4.1k • written 9 months ago by • 0
2
votes
1
reply
546
views
DataFrame Printing User Control
S4Vectors
updated 14 months ago by 16k • written 14 months ago by ★ 1.5k
0
votes
2
replies
1.1k
views
Using dplyr commands with DataFrame objects
S4Vectors
15 months ago GE • 0
5
votes
6
replies
1.0k
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 16 months ago by 16k • written 16 months ago by ★ 1.5k
4
votes
4
replies
1.8k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 21 months ago by ▴ 90
0
votes
1
reply
947
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 23 months ago by • 0 • written 2.0 years ago by • 0
11
votes
17
replies
3.0k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 2.1 years ago by ▴ 20 • written 2.2 years ago by ▴ 30
0
votes
3
replies
1.8k
views
How can i fix this problem in R
S4Vectors DESeq2
updated 2.6 years ago by ★ 4.6k • written 2.6 years ago by • 0
1
vote
7
replies
3.0k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
2.6 years ago MauriAndres • 0
0
votes
6
replies
1.9k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
4
votes
1
reply
1.3k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 3.1 years ago by 16k • written 3.1 years ago by ▴ 180
2
votes
3
replies
1.2k
views
S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 3.2 years ago by 16k • written 3.2 years ago by ▴ 80
0
votes
6
replies
2.2k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
3.3 years ago Richard • 0
3
votes
2
replies
4.0k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 3.7 years ago by 67k • written 3.7 years ago by ★ 1.5k
2
votes
1
reply
1.3k
views
DataFrame or DFrame
S4Vectors
updated 3.7 years ago by 700 • written 3.7 years ago by ★ 1.5k
0
votes
4
replies
1.9k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 4.1 years ago by 16k • written 4.1 years ago by • 0
2
votes
0
replies
895
views
News: BioC2021 organizing committee
BioC2021 S4Vectors
4.2 years ago Levi Waldron ★ 1.1k
1
vote
11
replies
2.6k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
2
votes
9
replies
2.2k
views
S4Vectors not loading
S4Vectors
4.9 years ago Panos Balomenos • 0
0
votes
7
replies
3.7k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.3 years ago james.dalgleish ▴ 30
0
votes
1
reply
1.0k
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors methods
5.4 years ago Aditya ▴ 160
1
vote
1
reply
993
views
Checking if to DataFrames are identical
S4Vectors DataFrame
5.4 years ago maltethodberg ▴ 180
1
vote
3
replies
2.0k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 5.4 years ago by ★ 11k • written 5.4 years ago by ▴ 90
2
votes
3
replies
1.8k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 5.5 years ago by ★ 13k • written 5.5 years ago by ▴ 30
0
votes
2
replies
1.9k
views
S4Vectors (and others) install error
s4vectors
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
5
votes
2
replies
1.1k
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.8 years ago by ★ 11k • written 5.8 years ago by 1.6k
3
votes
12
replies
3.2k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.9 years ago sergi.picart ▴ 20
5
votes
10
replies
2.6k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 30
0
votes
2
replies
1.5k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 6.0 years ago by 16k • written 6.0 years ago by • 0
0
votes
4
replies
2.0k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 6.0 years ago by 67k • written 6.0 years ago by ▴ 140
2
votes
2
replies
2.4k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 6.1 years ago by ★ 28k • written 6.1 years ago by • 0
0
votes
1
reply
1.7k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors R-3.5.1
6.1 years ago zhang303 • 0
0
votes
1
reply
3.5k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
0
votes
15
replies
2.5k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
updated 6.5 years ago by ▴ 10 • written 6.5 years ago by • 0
0
votes
0
replies
1.2k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
6.6 years ago endrebak85 ▴ 40
3
votes
12
replies
2.4k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.8 years ago by ★ 11k • written 6.8 years ago by ▴ 200
2
votes
1
reply
1.1k
views
Adding a column to a class that contains DataFrame
s4vectors
7.1 years ago • updated 7.0 years ago Michael Love 43k
1
vote
4
replies
2.8k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
4
votes
6
replies
1.8k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 7.1 years ago by ★ 11k • written 7.1 years ago by ▴ 180
1
vote
2
replies
2.0k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
6
votes
3
replies
4.3k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 20
1
vote
0
replies
1.7k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
7.3 years ago Leonardo Collado Torres ★ 1.1k
10
votes
10
replies
2.8k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 7.6 years ago by ▴ 40 • written 9.5 years ago by ★ 3.0k
1
vote
1
reply
1.1k
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.8 years ago by ★ 11k • written 7.8 years ago by • 0
4
votes
10
replies
2.6k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 70
3
votes
8
replies
2.9k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
8.0 years ago peter.kharchenko ▴ 30
0
votes
5
replies
1.8k
views
Using S4Vectors within a package
Package s4vectors
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
DataFrame showAsCell function
s4vectors
updated 8.3 years ago by ★ 11k • written 8.3 years ago by • 0
50 results • Page 1 of 1
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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