Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
8
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
1 hour ago
aogunbaw
• 0
0
votes
0
replies
14
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
4 hours ago
Seungmin
• 0
0
votes
0
replies
35
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
18 hours ago
Matthew Thornton
▴ 350
0
votes
4
replies
293
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 20 hours ago by
Ziliang
• 0 • written 11 days ago by
Ian D.
▴ 70
0
votes
3
replies
7.5k
views
SingleR Label.Ont
SingleR
updated 1 day ago by
Denis
• 0 • written 8 months ago by
saeed.khalili
• 0
2
votes
7
replies
264
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
4 days ago • updated 1 day ago
sajadahmad41454
• 0
0
votes
0
replies
38
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
1 day ago
315005358
• 0
1
vote
5
replies
494
views
Can't post a question containing code?
Bioconductor
updated 1 day ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
0
votes
1
reply
69
views
error
Biobase
2 days ago
NATASHA
• 0
3
votes
10
replies
355
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
updated 2 days ago by
James W. MacDonald
65k • written 5 days ago by
Abbey
• 0
0
votes
40
replies
2.9k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 2 days ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
0
votes
2
replies
1.5k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 2 days ago by
maria.soler
• 0 • written 15 months ago by
kalavattam
▴ 10
0
votes
1
reply
71
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 2 days ago by
ATpoint
★ 4.1k • written 2 days ago by
sajadahmad41454
• 0
5
votes
3
replies
278
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 2 days ago by
Gordon Smyth
50k • written 24 days ago by
Shaimaa Gamal
• 0
1
vote
2
replies
179
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq
duplicateCorrelation
limma
voom
3 days ago • updated 2 days ago
Dylan.Sheerin
• 0
0
votes
0
replies
34
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
2 days ago
neilzhao
▴ 30
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 3 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
1
vote
0
replies
278
views
News:
Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 3 days ago
shepherl
3.9k
0
votes
1
reply
64
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 3 days ago by
ATpoint
★ 4.1k • written 3 days ago by
sajadahmad41454
• 0
2
votes
4
replies
1.7k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 3 days ago by
Chris
• 0 • written 7.4 years ago by
Pekka Kohonen
▴ 190
3
votes
4
replies
468
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 4 days ago by
Mike Smith
★ 6.5k • written 6 days ago by
robersy
• 0
1
vote
3
replies
270
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 4 days ago by
ATpoint
★ 4.1k • written 10 days ago by
angelathuynh5
• 0
1
vote
5
replies
1.5k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 4 days ago by
Jiayu
• 0 • written 5 months ago by
yanling
• 0
3
votes
5
replies
233
views
Help with running egsea()
EGSEA
5 days ago • updated 4 days ago
Chris
• 0
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 4 days ago by
Gordon Smyth
50k • written 5.6 years ago by
CantExitVIM
▴ 10
0
votes
0
replies
41
views
Treeio as.treedata function seq lenght error
treeio
4 days ago
nromerov
• 0
3
votes
4
replies
246
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 4 days ago by
Gordon Smyth
50k • written 6 days ago by
Chris
• 0
1
vote
1
reply
146
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
zzrammal
• 0
4
votes
9
replies
460
views
Memory errors using read.bismark?
dmrseq
bsseq
4 weeks ago • updated 5 days ago
Juan Higareda
• 0
1
vote
1
reply
119
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
e1271094
• 0
0
votes
1
reply
76
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 5 days ago by
shepherl
3.9k • written 5 days ago by
cyril.dalmasso
• 0
0
votes
0
replies
57
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
5 days ago
Dinesh
• 0
0
votes
3
replies
3.7k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 5 days ago by
Caio
• 0 • written 13.1 years ago by
boczniak767
▴ 720
0
votes
3
replies
161
views
Couldn't connect to server while using "pathways"
graphite
updated 5 days ago by
Michael Love
42k • written 6 days ago by
fduguchunhui
• 0
4
votes
2
replies
589
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
9 days ago • updated 6 days ago
gene_bioconductor
▴ 10
3
votes
1
reply
116
views
How to save the DEXSeq results
DEXSeq
updated 6 days ago by
Michael Love
42k • written 6 days ago by
Sara
• 0
1
vote
1
reply
109
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 6 days ago by
Michael Love
42k • written 6 days ago by
mat149
▴ 70
1
vote
2
replies
198
views
Improving the design matrices vignette in RNAseq123
RNAseq123
20 days ago • updated 6 days ago
Lluís Revilla Sancho
▴ 730
2
votes
3
replies
214
views
package goseq seems to be not available on the latest version of R
goseq
updated 6 days ago by
Gordon Smyth
50k • written 8 days ago by
Patrycja
▴ 20
8
votes
7
replies
1.8k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 6 days ago by
Sara
• 0 • written 6.7 years ago by
Sylvain Foisy
▴ 80
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 6 days ago
Henrik Bengtsson
★ 2.4k
2
votes
2
replies
192
views
fgsea significant result
fgsea
7 days ago • updated 6 days ago
Chris
• 0
1
vote
1
reply
151
views
Handling multiple differential expression comparisons
DESeq2
updated 7 days ago by
Michael Love
42k • written 9 days ago by
Zainab
▴ 10
2
votes
3
replies
216
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 7 days ago by
ATpoint
★ 4.1k • written 8 days ago by
Reza
• 0
0
votes
6
replies
253
views
Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 8 days ago by
swbarnes2
★ 1.4k • written 9 days ago by
arfranco
▴ 130
1
vote
2
replies
366
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 8 days ago by
Gordon Smyth
50k • written 8 days ago by
Kim
• 0
0
votes
0
replies
123
views
Empty table plot using plotGseaTable()
fgsea
10 days ago • updated 8 days ago
Chris
• 0
1
vote
2
replies
336
views
CombineArrays for EPIC and EPIC V2
EPICV1
Methylation
combineArrays
minifi
EPICv2manifest
5 weeks ago • updated 8 days ago
Kim
• 0
0
votes
0
replies
101
views
dba.plotProfile() plotting and interpretation
DiffBind
9 days ago
Henry
▴ 10
0
votes
2
replies
148
views
Timecourse RNASeq analysis
DESeq2
ImpulseDE2
timecour
timecoursedata
moanin
12 days ago • updated 9 days ago
Aurora
• 0
45,639 results • Page
1 of 913
Recent ...
Replies
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Awards
• All
Popular Question
to
maria.soler
• 0
Popular Question
to
Pietro
▴ 40
Popular Question
to
neilzhao
▴ 30
Popular Question
to
ATpoint
★ 4.1k
Teacher
to
Michael Love
42k
Locations
• All
The city by the bay,
10 minutes ago
France,
28 minutes ago
EMBL Heidelberg,
37 minutes ago
United States,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
Traffic: 411 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6