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Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
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5
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9
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12
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Is there a need or general principle/rule to assess whether the data types/distribution etc is suitable for limma R package to derive differential fe…
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3
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internal error in trio library when trying to use lfmm() in LEA package
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0
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25
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How to use bootRanges to bootstrap small RNA loci (nullranges package)
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6
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16
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DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
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updated 4 days ago by 41k • written 4.6 years ago by ▴ 10
0
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5
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2.3k
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FeatureCounts output to SAM like htseq-counts?
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updated 9 months ago by ▴ 380 • written 7.0 years ago by • 0
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2
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Incorporating spike-ins to rna-seq analysis
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2
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8
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12 months ago • updated 11 months ago Luis • 0
4
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6
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DESeq2 for single cell pseudobulk processing
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updated 11 months ago by 41k • written 12 months ago by • 0
0
votes
10
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3
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1
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
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1
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Question regarding lfcShrink types in DiffBind
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updated 9 months ago by ★ 5.2k • written 9 months ago by ▴ 20
2
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2
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6
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overlapsAny for elements in GRangesList
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2
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3
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Fail BiocManager::install(version='3.12')
BioManager
updated 6 weeks ago by ★ 4.0k • written 2.1 years ago by ▴ 20
1,730 results • Page 3 of 35
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
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