Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
13
votes
35
replies
16k
views
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice
david
updated 5.8 years ago by
gevermalc
• 0 • written 8.8 years ago by
Vivek.b
▴ 100
0
votes
17
replies
2.6k
views
Defining Weights in marrayNorm.
Microarray
Microarray
updated 20.8 years ago by
Yuk Fai Leung
▴ 100 • written 20.8 years ago by
Josef Walker
▴ 20
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
0
votes
20
replies
5.2k
views
ttest or fold change
updated 20.4 years ago by
Garrett Frampton
▴ 20 • written 20.4 years ago by
Jason Hipp
▴ 40
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
0
votes
18
replies
3.7k
views
Genbank to Unigene IDs
annotate
AnnBuilder
annotate
AnnBuilder
updated 20.1 years ago by
Kane, David
▴ 10 • written 20.1 years ago by
Gordon Smyth
50k
0
votes
22
replies
3.1k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
6.8 years ago • updated 6.7 years ago
susobhanbaidya
• 0
0
votes
13
replies
2.5k
views
two color arrays normalization
limma
limma
updated 15.2 years ago by
Jenny Drnevich
★ 2.0k • written 15.3 years ago by
Giusy Della Gatta
▴ 110
1
vote
16
replies
3.7k
views
Error: could not find function "dba"
software error
diffbind
dba
7.6 years ago • updated 7.5 years ago
mmarins
• 0
8
votes
17
replies
15k
views
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.3 years ago by
brohawndg
▴ 150
1
vote
24
replies
4.9k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
6.6 years ago
achaillon
• 0
11
votes
25
replies
11k
views
readCufflinks problem with extdata
cummerbund
updated 6.7 years ago by
markus.ball
▴ 10 • written 6.9 years ago by
biakemi
▴ 40
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.6 years ago by
alessandro brozzi
▴ 120
0
votes
16
replies
2.6k
views
Finding GO leaf nodes for an ontology - which package?
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Tim Smith
★ 1.1k
0
votes
27
replies
2.8k
views
summarizeOverlaps mode ignoring inter feature overlaps
11.1 years ago
Thomas Girke
★ 1.7k
0
votes
16
replies
2.6k
views
Affy: Present calls in an eset
updated 20.6 years ago by
Stephen Henderson
★ 1.0k • written 20.6 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
10
replies
2.0k
views
ABPkgBuilder Error;
18.8 years ago
Barry Henderson
▴ 250
2
votes
12
replies
2.5k
views
I want to order genes in GO groups
gene ontology
genefilter
updated 8.7 years ago by
b.nota
▴ 360 • written 8.7 years ago by
kanacska
▴ 10
4
votes
21
replies
3.5k
views
RMA normaliztion using XPS
normalization
xps
updated 9.1 years ago by
cstrato
★ 3.9k • written 9.1 years ago by
dhwani.dholakia
• 0
3
votes
12
replies
3.9k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by
Thomas Carroll
▴ 420 • written 9.2 years ago by
atisou
• 0
2
votes
15
replies
3.1k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.1 years ago • updated 9.0 years ago
mnaymik
▴ 10
0
votes
17
replies
2.2k
views
Coverage by base
Coverage
Coverage
12.6 years ago
rohan bareja
▴ 200
1
vote
13
replies
5.7k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
7.8 years ago
phpaul2010
• 0
0
votes
12
replies
2.1k
views
KEGGSOAP
KEGGSOAP
KEGGSOAP
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.2 years ago by
Dr.Mayhaus Manuel
▴ 30
4
votes
15
replies
3.1k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
8.8 years ago • updated 8.7 years ago
diana.schreier
• 0
1
vote
21
replies
3.5k
views
Rsubread stopping half-way through align
rsubread
7.9 years ago • updated 7.7 years ago
Campbell.1933
• 0
0
votes
10
replies
2.3k
views
how to revert to an older limma version?
16.9 years ago • updated 16.8 years ago
Maya Bercovich
▴ 50
0
votes
10
replies
2.8k
views
read.GenePix not opening connection
Microarray
marray
Microarray
marray
updated 18.9 years ago by
Tony Kowal
▴ 20 • written 18.9 years ago by
Amy Mikhail
▴ 460
6
votes
22
replies
4.0k
views
Oligo package: paCalls questions
microarray
oligo
updated 9.0 years ago by
cstrato
★ 3.9k • written 9.0 years ago by
whyuen
▴ 20
0
votes
8
replies
1.6k
views
uppercase & lowercase
updated 17.0 years ago by
Saroj Mohapatra
▴ 450 • written 17.0 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
8
replies
4.3k
views
GSVA: problem with chip annotation
gsva
updated 9.5 years ago by
Robert Castelo
★ 3.3k • written 9.6 years ago by
q017mm
• 0
7
votes
28
replies
6.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 3 months ago by
Gordon Smyth
50k • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
11
replies
6.3k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 3.4 years ago by
坤
• 0 • written 8.2 years ago by
Shicheng Guo
• 0
0
votes
11
replies
2.0k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
VariantAnnotation
Annotation
VariantAnnotation
VariantTools
VariantAnnotation
Annotation
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
Thomas Girke
★ 1.7k
0
votes
14
replies
2.5k
views
got 0 significant differential bound (DB)
diffbind
7.0 years ago • updated 6.9 years ago
mforoo1
• 0
0
votes
12
replies
3.3k
views
testing GO categories with Fisher's exact test.
GO
Category
GO
Category
updated 20.2 years ago by
James W. MacDonald
66k • written 20.2 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
21
replies
5.2k
views
unable to readImage using EBImage package
EBImage
EBImage
updated 12.2 years ago by
Nurdiyanah Jambari
▴ 90 • written 12.2 years ago by
Guest User
★ 13k
0
votes
10
replies
4.2k
views
GOStat and multiple testing
GO
GOstats
GO
GOstats
updated 19.8 years ago by
A.J. Rossini
▴ 810 • written 19.8 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
9
replies
3.5k
views
rhdf5 32-bit unsigned int issue
rhdf5
bug
updated 8.9 years ago by
Bernd Fischer
▴ 550 • written 8.9 years ago by
wrob311
• 0
0
votes
10
replies
2.4k
views
Getting rawdata for TMM normalization
normalization
7.9 years ago
humberto_munoz
• 0
5
votes
14
replies
4.9k
views
gene symbols in Gviz
Gviz
8.9 years ago
Bogdan
▴ 670
0
votes
13
replies
5.9k
views
gage pathways enrichment analysis
gage
pathways
kegg
updated 9.5 years ago by
Luo Weijun
★ 1.6k • written 9.5 years ago by
francesca.defilippis
▴ 100
0
votes
10
replies
1.5k
views
Lumi warning and question
16.7 years ago
Ingrid H. G. Østensen
▴ 700
2
votes
30
replies
4.4k
views
ggbio 1.12.0 autoplot() with txdb example is broken
TranscriptDb
TranscriptDb
updated 10.1 years ago by
Tengfei Yin
▴ 490 • written 10.1 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
9
replies
2.0k
views
Pooling in microarray studies
updated 20.6 years ago by
Tan, MinHan
▴ 180 • written 20.6 years ago by
Wiesner Vos
▴ 50
1
vote
9
replies
3.8k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
francesca casalino
▴ 50
0
votes
8
replies
1.6k
views
info su illumina
updated 18.3 years ago by
Lynn Amon
▴ 110 • written 18.3 years ago by
Alberto Goldoni
▴ 360
2
votes
13
replies
3.2k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.8 years ago • updated 7.3 years ago
s.munster
▴ 40
0
votes
16
replies
2.0k
views
Re: [S] Error in clustering procedure
Clustering
Clustering
updated 19.7 years ago by
Stephen Henderson
★ 1.0k • written 19.7 years ago by
cstrato
★ 3.9k
0
votes
32
replies
4.0k
views
How to do clustering
updated 16.9 years ago by
Seth Falcon
★ 7.4k • written 17.0 years ago by
ssls sddd
▴ 260
45,680 results • Page
1 of 914
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Awards
• All
Popular Question
to
landenshanie
▴ 40
Popular Question
to
minardsmitha
▴ 10
Teacher
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Mike
• -60
Popular Question
to
shepherl
3.9k
Locations
• All
Germany,
just now
Israel,
just now
Spain,
2 minutes ago
WEHI, Melbourne, Australia,
11 minutes ago
Italy,
19 minutes ago
Traffic: 579 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6