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5.4 years ago Sindre ▴ 110
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5.4 years ago Solarion • 0
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5.4 years ago harelarik ▴ 60
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Error in DESeqDataSet : some values in assay are not integers
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can the counts extracted from Diffbind be used to analysis in Deseq2 as the RNAseq?
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mixOmics plotIndiv misspecifies the sample groups in legend
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5.4 years ago km_sch2002 • 0
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Problem for installing arrayQualityMetrics package?
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how to understand DESeq2 results comparison
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updated 5.4 years ago by 53k • written 5.4 years ago by • 0
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Error with xcms - requiring MSnbase 2.15.3 but not installing
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updated 5.4 years ago by 1.6k • written 5.4 years ago by • 0
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5.4 years ago hstern2 • 0
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5.4 years ago Pietro ▴ 40
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the results from normalized=TRUE and normalized = FALSE is the same
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5.4 years ago mchakiachvili ▴ 20
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5.4 years ago ianrector97 • 0
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Single cell WGS and ATAC-seq tools
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5.4 years ago lirongrossmann ▴ 80
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updated 5.4 years ago by ★ 29k • written 5.4 years ago by ★ 5.0k
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updated 5.4 years ago by 53k • written 5.4 years ago by • 0
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5.4 years ago Bioinformatician_R ▴ 20
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5.4 years ago guido.guberman • 0
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Add gene symbol when making TxDb
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updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 90
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updated 5.4 years ago by 4.3k • written 5.4 years ago by • 0
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updated 5.4 years ago by 43k • written 5.4 years ago by • 0
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ASpli package function plotGenomicRegions fails in windows
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dupRadar: low % of duplicates for 150bp PE RNAseq
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Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
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Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
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Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
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Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
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Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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