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Author footnotes in BiocWorkflowTools::f1000_article template
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DESeq2: error message
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5.6 years ago weichengz ▴ 10
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5.6 years ago Charlotte • 0
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CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
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How to perform contrasts within groups
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the function DMR in ChAMP package
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reactomePA error input file
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blosc compression with rhdf5
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updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
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Limma: how to interpret logFC for interaction contrast
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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GO vs GOALL in rrvgo and GOSemSim
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5.6 years ago Jenny Drnevich ★ 2.0k
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readMSData and netCDF files, how to set polarity ?
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updated 5.6 years ago by ★ 2.1k • written 5.6 years ago by ▴ 30
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Non-integer values in salmon counts change DE analyses
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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extracting the genes associated with a specific pathway
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News: Bioc2020 - Virtual Conference Registration
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News: Updated annotation packages
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5.6 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
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Determining sample size in contrast groups
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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edgeR Time course analysis, choice on degree of freedom
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updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 10
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6
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Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 5.6 years ago by 53k • written 5.6 years ago by • 0
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14
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Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
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updated 5.6 years ago by ▴ 80 • written 5.7 years ago by ▴ 30
3
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2
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Error from DegPlot $<-.data.frame`(`*tmp*`, "xs", value = integer(0)) : replacement has 0 rows, data has 96
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What is the use of the BStringSet?
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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Cross-species analysis and normalization with DESeq2
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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Understanding ColData in BiSeq
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5.6 years ago akhaira • 0
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namespace conflict flowAI and ggCyto
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DESeq2 log2foldchange shows opposite sign than clearly visible in pseudocounts or vst values (correct order in contrast)
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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Don't let TopGo to trimm long GO names
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updated 2.9 years ago by 68k • written 5.6 years ago by ▴ 30
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Differential gene expression analysis
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updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 10
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Job: Post-Doctoral Research Fellow, Cancer Genomics
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5.6 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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5.6 years ago Fred Hutch (Recruiting) ▴ 40
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DESeq error: Error in validityMethod(object) : nrow(design) == ncol(object) is not TRUE
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
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Rescaling predictors in DESeq changes outcomes?
deseq2 glm rescale
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 10
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ggcyto wrong axis scale?
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updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 10
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clusterProfiler merge_result dotplot
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EBTest error please add gene/isoform names to the data matrix
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5.6 years ago lli2 • 0
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Argument map.symbol converting IDs even when its value is FALSE
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updated 5.6 years ago by ★ 4.0k • written 6.8 years ago by • 0
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Difficulty Installing Bioconductor
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DESeq2: Subset dataset or use interaction in design
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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Help installing clusterProfiler
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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openCyto Problem: Registered Gating Function Executes Twice when Called
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5.6 years ago geoffreylewen • 0
0
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2.3k
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GSVA on integrated/batch corrected scRNAseq data
GSVA Job
updated 5.6 years ago by ★ 3.4k • written 5.6 years ago by • 0
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News: Single Package Builder / New Package Submission
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5.6 years ago shepherl 4.2k
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
0
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Strange p values for DEG analysis with covariates using DESeq2
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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rnaseqDTU Workflow, Precision estimation error.
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updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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821
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How to treat genes in RNAseq analyses
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updated 5.6 years ago by 68k • written 5.6 years ago by • 0
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