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3
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lfcSE always positive. Does this make sense?
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updated 2.0 years ago by 21k • written 2.0 years ago by • 0
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2
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2.1 years ago • updated 2.0 years ago Sabiha ▴ 20
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Job: Postdoc and Bioinformatician position in metagenomic data analysis available
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updated 17 months ago by • 0 • written 2.1 years ago by ★ 1.1k
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DESeq2: Difference in DEG numbers when switching reference condition (numerator, denominator) using contrast
DESeq2
updated 2.0 years ago by 43k • written 2.1 years ago by • 0
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2
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1.8k
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DESeq2 collinearity, adjusting for covariates, and the ground truth
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updated 2.1 years ago by 43k • written 2.1 years ago by • 0
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RN to EC Mapping Not Working for Some Nodes
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updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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DESeq2: the model matrix is not full rank issue
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updated 2.0 years ago by • 0 • written 2.1 years ago by • 0
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3
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Difference between vst() and varianceStabilizingTransform()
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written 2.1 years ago by • 0
0
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3
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Statistical test
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5
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Unexpected results for a differential expression analysis between males and females
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updated 2.1 years ago by ★ 3.4k • written 2.1 years ago by • 0
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Use of data packages in containers
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updated 2.0 years ago by ▴ 760 • written 2.1 years ago by ▴ 20
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0
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964
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Job: Postdoc position: Spatial and Single-Cell Computational Immunogenomics (@SAiGENCI, Adelaide)
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2.1 years ago Stefano Mangiola ▴ 40
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5
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2.6k
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scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
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updated 2.1 years ago by ★ 4.0k • written 2.1 years ago by • 0
2
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4
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Different genes expression with limma
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updated 2.0 years ago by 53k • written 2.1 years ago by • 0
0
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1
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tximport error with rsem files
rsem tximport
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
0
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0
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Normalization in methylation analysis
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2.1 years ago kyj2226 • 0
2
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1
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1.5k
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Txdb object for UCSC hs1 (T2T-CHM13)
T2T-CHM13 GenomicFeatures
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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2
replies
853
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Running DESeq on normalized data
deseq DESeq2
updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
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Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 2.1 years ago by ★ 5.0k • written 7.7 years ago by • 0
0
votes
1
reply
816
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
0
votes
2
replies
968
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EBImage - Selecting parameters for x-ray seed size analysis
EBImage
updated 2.1 years ago by ★ 13k • written 2.1 years ago by • 0
1
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2
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Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
2.1 years ago elgomez • 0
1
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4
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2.5k
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BiocParallel serialization errors on Windows
variancePartition BiocParallel
2.1 years ago hayleyw • 0
0
votes
2
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1.3k
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StringDB: Cannot use payload mechanism to colour nodes
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2.1 years ago Luca • 0
0
votes
2
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3.0k
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EnhancedVolcano with labels based on log2 Fold Change
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written 2.1 years ago by • 0
0
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2
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974
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In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 2.1 years ago by ▴ 10
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votes
6
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2.2k
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flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
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updated 2.1 years ago by ▴ 360 • written 2.1 years ago by • 0
0
votes
7
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1.8k
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ATACseqQC shiftGAlignmentsList() problem
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updated 22 months ago by ▴ 10 • written 2.1 years ago by • 0
0
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2
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1.2k
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Linear Model Fitting and Colinearity
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2.1 years ago Hugo • 0
0
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2
replies
1.2k
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Error Oligo package asking for pd.2.0 package annotation
oligo
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
4
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3
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WGCNA documentation not available
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written 2.1 years ago by ▴ 10
1
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2
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857
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Assess fit of variance prior
limma
updated 2.1 years ago by 53k • written 2.1 years ago by ▴ 30
0
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3
replies
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written 4.9 years ago by • 0
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5
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written 12.0 years ago by ★ 13k
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oligo microarray r bioconductor
written 10.9 years ago by ▴ 10
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News: Bioconductor 3.18 is Released!
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written 2.2 years ago by 4.2k
5
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11
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How to annotate gene names for genomic coordinates?
annotation
written 10.6 years ago by • 0
2
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1
reply
651
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removeBatchEffect with non-linear model fit
limma DESeq2
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
0
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2
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updated 2.1 years ago by ★ 5.0k • written 2.1 years ago by • 0
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2
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Inconsistent results in DiffBind
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2.1 years ago Sam ▴ 10
3
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2
replies
1.4k
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
2.1 years ago kyj2226 • 0
1
vote
2
replies
884
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autonomics: example("read_somascan", package = "autonomics") fails, but not on Bioc check servers
autonomics
2.1 years ago Henrik Bengtsson ★ 2.4k
1
vote
13
replies
2.5k
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Small RNA-seq Analysis DESEQ2 : Unexpected Significance
conditions replicates SmallRNAData DESeq2
updated 2.0 years ago by ★ 4.0k • written 2.1 years ago by ▴ 10
2
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4
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Correct the batch effect in methylation analysis in R
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updated 2.1 years ago by 53k • written 2.1 years ago by • 0
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votes
3
replies
938
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Agilent Microarray Gene Oncology analysis gone wrong
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updated 2.1 years ago by ▴ 360 • written 2.1 years ago by • 0
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4
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Problems with FLOWAI
flowAI
written 4.7 years ago by • 0
0
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1
reply
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Interaction terms in DESeq2
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updated 2.1 years ago by 68k • written 2.1 years ago by • 0
1
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4
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JoinLayers function for Seurat Object for annotation with SingleR
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votes
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Filter genes by expression for voomLmFit
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updated 2.1 years ago by 53k • written 2.1 years ago by • 0
46,710 results • Page 36 of 935
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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