0
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1
reply
1.2k
views
error when running champ.CNA command
ChAMP
updated 9.6 years ago by ▴ 60 • written 9.6 years ago by • 0
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deepSNV with all counts equal to zero
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9.8 years ago • updated 9.6 years ago thestaroceanster • 0
1
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8
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Normalization starting from beta values in minfi
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written 9.6 years ago by ▴ 290
4
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12
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pairwise combining factors or multifactor analysis ? (DESeq2)
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9.7 years ago • updated 9.6 years ago aziza ▴ 20
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2
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EdgeR experimental design matrix
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updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
0
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5
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DESeq2 how to use interaction term in formula
deseq2
updated 9.6 years ago by 43k • written 9.6 years ago by • 0
1
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2
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Testing for differential binding above a log2 fold change threshold using DiffBind
diffbind
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ▴ 20
0
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0
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
9.6 years ago Abhishek Pratap ▴ 190
0
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2
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FourCSeq- without replicates
fourcseq
updated 9.6 years ago by ▴ 150 • written 9.6 years ago by • 0
1
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1
reply
2.0k
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How to manually set base landmark in flowStats gaussNorm
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9.6 years ago Jiang, Mike ★ 1.3k
0
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1
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1.3k
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FlowStats: Normalised flowset is recognised as null after gaussNorm normalisation process
gaussNorm issues null database
updated 9.6 years ago by ★ 1.3k • written 9.6 years ago by • 0
0
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0
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ggbio: axis in karyogram line graph overlay
ggbio
9.6 years ago map2085 ▴ 40
0
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1
reply
1.4k
views
ggbio axis in karyogram
ggbio
updated 3.3 years ago by • 0 • written 9.6 years ago by ▴ 40
0
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0
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1.2k
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Cannot replicate VCF plot from help page
ggbio
9.6 years ago kevin.rue ▴ 350
4
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4
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2.9k
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Apply the plotPCA function in DESeq2 package to quantitative MS-based data
deseq2
updated 9.6 years ago by ▴ 420 • written 9.6 years ago by ▴ 30
1
vote
3
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1.9k
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CopywriteR can't finish calculating copy number
copywriter bam
updated 9.6 years ago by ▴ 170 • written 9.6 years ago by • 0
0
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1
reply
2.1k
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metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 9.6 years ago by ▴ 20 • written 9.6 years ago by • 0
0
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0
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1.5k
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Job: Postdoctoral Researcher in the Computational Systems Pharmacology Research Group at University of Turku, Finland
systemsbiology network analysis drugvsdisease Job
9.6 years ago jing.tang • 0
0
votes
7
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1.9k
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why two different makeContrasts have the same results?
edger makecontrasts
9.6 years ago xiaoaozqd • 0
1
vote
18
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4.6k
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Normalization of chip-seq data in manually specified regions using CSAW
chip-seq TSS TMM csaw
updated 9.6 years ago by ★ 29k • written 9.6 years ago by ▴ 10
1
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2
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1.9k
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limma normalization and arrayWeights fold change
limma arrayweights logfoldchange neqc normalization
updated 9.6 years ago by ▴ 840 • written 9.6 years ago by • 0
4
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4
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Deseq2 results interpretation
deseq2 multiple factor design results
9.6 years ago koeniger ▴ 10
0
votes
2
replies
2.1k
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Cannot install package mygene on Bioconductor 3.3, R 3.3.0
mygene bioconductor openssl httr
9.6 years ago carlos.chau.hk • 0
2
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2
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1.9k
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Batch effect removal
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9.6 years ago Eleni Christodoulou ▴ 150
0
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1
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1.2k
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question about KEGGREST
bioconductor
9.6 years ago weixiaoyu • 0
0
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1
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2.1k
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fitZig coefficient for interaction terms?
metagenomeseq
updated 9.6 years ago by ▴ 280 • written 9.6 years ago by • 0
0
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1
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1.5k
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Aggregate By Taxonomy Error
metagenomeSeq
updated 9.6 years ago by ▴ 280 • written 9.6 years ago by • 0
0
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Biostrings character vector conversion
biostrings
9.6 years ago ribioinfo ▴ 100
0
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2
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1.0k
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Estimate dispersion DESeq2 and gene number
deseq2
9.6 years ago ribioinfo ▴ 100
0
votes
0
replies
1.3k
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Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
9.6 years ago svlachavas ▴ 840
0
votes
0
replies
1.3k
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Job: Post-doctoral position in algorithms for cancer data analysis
algorithms ChIP-seq cancer Job
9.6 years ago valentina.boeva • 0
6
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7
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2.8k
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Requesting flank sequences (BioMart::Exception)
biomart plants_mart
updated 4.9 years ago by ▴ 20 • written 9.6 years ago by • 0
0
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1
reply
1.5k
views
Problem installing Bioc Workflows
rnaseq workflows bioconductor
9.6 years ago Hadi Gharibi • 0
4
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4
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2.8k
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How to handle the change in resultsNames() for DESeq2 ?
deseq2 resultsnames multifactorial design
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
1
vote
2
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1.2k
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Thresholded testing in edgeR for only positive log fold changes
edger
updated 9.6 years ago by ★ 29k • written 9.6 years ago by ▴ 20
3
votes
5
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2.2k
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DESeq2 multifactor and paired sample analysis
deseq2
9.7 years ago • updated 9.6 years ago amy • 0
1
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0
replies
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Job: Summer Studentship in Data Science (Cancer Research) at the University of Cambridge
cancer summer studentship Job
9.6 years ago Shamith.Samarajiwa ▴ 180
2
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1
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1.4k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools GAlignments pileup
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 10
4
votes
9
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2.4k
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limma paired design with continous covariate
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updated 9.6 years ago by ★ 13k • written 9.6 years ago by ▴ 30
2
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1
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1.4k
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Use matchPattern for large DNAStrings
biostrings annotate
updated 9.6 years ago by 16k • written 9.6 years ago by ▴ 40
4
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3
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5.5k
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How to do a confounding variable adjustment without using the treatment information?
deseq2 rnaseq_analysis variancestabilizingtransformation confounders
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
0
votes
5
replies
1.9k
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Error Raised When Trying To Use pileup()
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updated 9.6 years ago by 25k • written 9.6 years ago by • 0
0
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2
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permutation with plink
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updated 9.6 years ago by 68k • written 9.6 years ago by • 0
1
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2
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943
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how/what to use to perform Differential Expression Gene if log2 available?
microarray limma edgeR
updated 9.6 years ago by 53k • written 9.6 years ago by • 0
0
votes
2
replies
1.7k
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Broken AnnotationHub resource (AH21414 | grasp2)
annotationhub grasp2 grasp2db
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 760
3
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11
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should I use rsem's summary to genes or tximport's?
tximport
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 10
0
votes
0
replies
1.1k
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I am getting a champ error during BatchNorm
ChAMP illumina methylationepic 450k
9.6 years ago brenna.hott • 0
0
votes
1
reply
829
views
modified the header data in the fixed slots of a VCFHeader object
variantannotation
updated 9.6 years ago by ★ 11k • written 9.6 years ago by • 0
2
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3
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1.1k
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DEGs : finding DE genes specific for one condition
deseq2 R rnaseq
9.6 years ago alva.james • 0
0
votes
0
replies
1.4k
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
9.6 years ago kevin.rue ▴ 350
46,712 results • Page 393 of 935
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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