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9.9 years ago balwierz ▴ 40
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9.9 years ago xishan78 • 0
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updated 9.9 years ago by 43k • written 9.9 years ago by ▴ 10
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R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
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9.9 years ago John ▴ 30
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How to find the standard deviation of the gene counts in DeSeq2?
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giving weight to DEG from limma output
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BRB ArrayTool question
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Find Intron Length from Annotation File?
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updated 9.9 years ago by 25k • written 9.9 years ago by • 0
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Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
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updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 90
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Approaches to group the RNA-Seq samples with large heterogeneity
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updated 9.9 years ago by 43k • written 9.9 years ago by ▴ 10
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How to get list of E.coli genes wit their details on Genome?
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updated 9.9 years ago by 6.7k • written 9.9 years ago by ▴ 50
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DNAString: Standard checksum function?
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drop levels in eSet pData
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What does DESeq2 rlog() return exactly?
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46,730 results • Page 406 of 935
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
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Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
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thank you very much. https://www.biostars.org/p/9617271/
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