Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
990
views
making a graph for gene enrichment analysis
annotation
9.9 years ago
xlyan011
• 0
0
votes
0
replies
962
views
making a graph for gene enrichment analysis
annotation
9.9 years ago
xlyan011
• 0
6
votes
7
replies
2.4k
views
ENCODExplorer doesn't return results which are on the website
encodexplorer
updated 9.9 years ago by
Mike Smith
★ 6.6k • written 9.9 years ago by
liz.ingsimmons
▴ 140
0
votes
1
reply
2.4k
views
EdgeR: Each treatment as a group versus treatment effects over all times?
edgeR
limma
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
Ekarl2
▴ 80
1
vote
1
reply
1.6k
views
Multiple variables in fitFeaturemodel
metagenomeseq
updated 9.9 years ago by
Joseph Nathaniel Paulson
▴ 280 • written 9.9 years ago by
sajancr
• 0
0
votes
4
replies
5.7k
views
RNAseq Adjusting for Covariates?
RNA
rnaseq
Covariate
adjustment
deseq
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
sjs0282
• 0
3
votes
3
replies
4.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
0
votes
0
replies
994
views
Mouse ST 2.1 noncoding
microarray
affymetrix microarrays
9.9 years ago
miquel.garcia
• 0
0
votes
0
replies
1.9k
views
Job:
2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd
NGS
cancer
prostate
Job
9.9 years ago
Daniel Brewer
▴ 100
1
vote
1
reply
1.7k
views
Filtering by bead count
methylumi
updated 9.9 years ago by
Mike Smith
★ 6.6k • written 9.9 years ago by
khadeeja ismail
▴ 400
4
votes
10
replies
3.4k
views
Effects of continuous variable with adjustment for gender
edger
limma
voom
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
jhj89
▴ 10
5
votes
9
replies
2.5k
views
Paired samples, two time points, two groups and adjust for a continuous variable in edgeR
edger
limma
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
Sindre
▴ 70
0
votes
0
replies
2.0k
views
Job:
Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job
bioinformatics
ngs
genomics
statistics
Job
9.9 years ago
Hui Sun Leong
▴ 10
4
votes
2
replies
6.2k
views
How to run the rpkm function of edgeR
edger
rpkm
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
Gary
▴ 20
3
votes
2
replies
8.8k
views
Volcano plot in DEseq2
deseq2
9.9 years ago
John
▴ 30
2
votes
1
reply
1.2k
views
Non-sense results using a continuous variable as predictor in LIMMA
limma
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
Sindre
▴ 70
0
votes
1
reply
2.0k
views
ExomeDepth Package Error Messages
cnv
exome
9.9 years ago
Bio152
▴ 150
0
votes
0
replies
1.2k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.9 years ago
Udi Landau
▴ 30
2
votes
10
replies
2.8k
views
Design matrix for unbalanced data
edgeR
RNA-Seq
design matrix
multifactorial design
9.9 years ago
Yogender Gowtham
▴ 20
0
votes
5
replies
4.7k
views
How to import data to R
annotation
updated 9.9 years ago by
arfranco
▴ 130 • written 9.9 years ago by
xlyan011
• 0
1
vote
2
replies
2.7k
views
unable to find Lumi package in R
lumi
updated 9.9 years ago by
Steve Lianoglou
★ 13k • written 9.9 years ago by
nayeli0126
• 0
1
vote
3
replies
2.5k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
liz.ingsimmons
▴ 140
0
votes
1
reply
2.3k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
written 9.9 years ago by
alexvpickering
▴ 110
2
votes
4
replies
3.1k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
0
votes
5
replies
2.2k
views
Normalisation of RNA seq data
rnaseq
bioconductor
R
normalization
updated 9.9 years ago by
chris86
▴ 420 • written 9.9 years ago by
Fiona
▴ 70
0
votes
1
reply
1.8k
views
Error: The specified genome ./data/BSgenome.Hsapiens.UCSC.hg19 does not have the extension of a fasta file (fa,fasta,fna)
quasr error
updated 9.9 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.9 years ago by
ezgi_can00
• 0
1
vote
2
replies
1.6k
views
Submitting an experimental data package
submit package
experimentdata
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
mark.dunning
▴ 20
3
votes
5
replies
2.3k
views
How to use DiffBind to get consensus peaks I am interested in?
DiffBind
updated 9.9 years ago by
Rory Stark
★ 5.2k • written 9.9 years ago by
Gary
▴ 20
0
votes
1
reply
1.4k
views
Error in creating scheme (xps package)
xps
root
scheme
probeset
updated 9.9 years ago by
cstrato
★ 3.9k • written 9.9 years ago by
Biologist
▴ 120
0
votes
0
replies
1.3k
views
MaSigPro - pre-filtering of genes
MaSigPro
9.9 years ago
GFM
▴ 20
0
votes
6
replies
2.3k
views
SomaticSignatures: Interpretation of plotSamples graphs
somaticsignatures
9.9 years ago
Jane Merlevede
▴ 90
0
votes
1
reply
1.6k
views
Gviz Group of different sizes
gviz
R
granges
updated 9.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.9 years ago by
drummerz
• 0
4
votes
2
replies
2.9k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 9.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.9 years ago by
I-Hsuan Lin
▴ 10
1
vote
0
replies
1.8k
views
Recall genotypes from Illumina idat files using crlmm package
crlmm
genotype
9.9 years ago
nadne
▴ 10
4
votes
10
replies
5.6k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 9.9 years ago by
Peter Hickey
▴ 760 • written 9.9 years ago by
Ahdee
▴ 60
0
votes
1
reply
1.5k
views
News:
Bioconductor 3.3 release schedule
release schedule
News
9.9 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.8k
views
News:
New Package Submission Deadline
Packages
News
9.9 years ago
Martin Morgan
25k
3
votes
8
replies
2.8k
views
Multiple group analysis
deseq2
9.9 years ago
John
▴ 30
0
votes
2
replies
5.0k
views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
updated 9.9 years ago by
Laurent Gatto
1.6k • written 9.9 years ago by
Marie
• 0
1
vote
1
reply
2.4k
views
DESeq2 showing little if none significant DE genes (none if considering p-adj)
deseq2
multiple factor design
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
wariobrega
• 0
1
vote
6
replies
2.4k
views
how to deal the effect of enormous gene expression?
deseq2
rnaseq
tomato
geneexpression
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
hamaor
• 0
1
vote
3
replies
1.2k
views
Grouping similar genes in differential expression analysis to increase power
deseq2
rnaseq
differential gene expression
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
willmacnair
• 0
2
votes
1
reply
7.4k
views
DESeq2 factors and ANOVA
deseq2
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
tony.fox2016
▴ 40
0
votes
1
reply
1.7k
views
[ChIPseeker; feature request] More flexibility in specifying the TSS region
ChIPseeker
featurerequest
tss
updated 9.9 years ago by
Guangchuang Yu
★ 1.2k • written 9.9 years ago by
balwierz
▴ 40
0
votes
0
replies
1.7k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo for RNA degradation plot
oligo
rnadegradationplot
affymetrix microarrays
pd.hugene.2.0.st
9.9 years ago
Biologist
▴ 120
0
votes
4
replies
2.7k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo/affy
affy
oligo
updated 9.9 years ago by
Biologist
▴ 120 • written 11.0 years ago by
WATSON Mick
▴ 50
0
votes
2
replies
3.4k
views
rtracklayer /GRange object to BED format?
granges
rtracklayer
updated 9.9 years ago by
Michael Lawrence
★ 11k • written 9.9 years ago by
Vang Le
▴ 80
0
votes
0
replies
1.7k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
9.9 years ago
Vang Le
▴ 80
2
votes
3
replies
1.5k
views
DEXSeq ignore non-coding regions
dexseq
updated 9.9 years ago by
Alejandro Reyes
★ 1.9k • written 9.9 years ago by
igor
▴ 50
0
votes
2
replies
1.3k
views
gene/protein expression discordance
written 20.5 years ago by
Simon Lin
▴ 210
46,712 results • Page
409 of 935
Recent ...
Replies
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Popular Question
to
Hervé Pagès
16k
Teacher
to
Michael Love
43k
Locations
• All
United Kingdom,
5 minutes ago
United States,
59 minutes ago
United States,
1 hour ago
The city by the bay,
1 hour ago
Barcelona, Spain,
2 hours ago
Traffic: 982 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6