1
vote
1
reply
828
views
GeneticsBase for 3.1.1
geneticsbase Bioconductor R version 3.1.1
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by • 0
0
votes
2
replies
857
views
Package RTools4TB is not avaliable for download with R
RTools4TB
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
0
votes
0
replies
2.1k
views
News: Ensembl GRCh37 release 79 data update
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10.8 years ago Thomas Maurel ▴ 800
5
votes
6
replies
1.8k
views
How to submit limma patch
limma
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 50
8
votes
2
replies
6.7k
views
interpreting LRT results DESeq2
deseq2 LRT RNA-Seq
updated 10.8 years ago by 43k • written 10.8 years ago by ▴ 90
2
votes
2
replies
4.0k
views
Down/Up-regulated genes asymmetry in edgeR differential expression analysis
edgeR rnaseq
10.8 years ago Pauly Lin ▴ 160
2
votes
6
replies
2.3k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
10.8 years ago svlachavas ▴ 840
12
votes
5
replies
9.2k
views
Theoretical WGCNA Question
WGCNA Theory Scale-Free Topology
updated 21 months ago by • 0 • written 10.8 years ago by ▴ 150
3
votes
8
replies
4.8k
views
(not) Understanding EdgeR coefficients
edger
updated 10.8 years ago by 53k • written 10.8 years ago by • 0
0
votes
0
replies
2.6k
views
Job: Bioinformatics Scientist opportunity in Novartis Oncology, Cambridge, MA
oncology drug development job bioinformatics scientist pharma Job
10.8 years ago Kavitha Venkatesan ▴ 30
3
votes
2
replies
4.2k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 10.8 years ago by ▴ 30 • written 10.8 years ago by ▴ 20
2
votes
2
replies
2.8k
views
Memory management in R
stats
updated 10.8 years ago by 25k • written 10.8 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm copy number
10.8 years ago kforner • 0
0
votes
1
reply
1.3k
views
SomaticSignatures : could not find scaSNVRanges
somaticsignatures
10.8 years ago simonjean434 ▴ 10
5
votes
4
replies
24k
views
Report and compare log2FC vs FC
deseq2 logfc
updated 10.8 years ago by ▴ 10 • written 10.8 years ago by ▴ 90
0
votes
0
replies
1000
views
cellHTS2 data representation
data representation in graphical forms
10.8 years ago sow19872003 • 0
0
votes
2
replies
4.5k
views
Reading Strings from MAT Files using rhdf5
rhdf5 characters
updated 10.8 years ago by ▴ 550 • written 10.8 years ago by • 0
0
votes
0
replies
1.2k
views
ggbio circular plot rectangle colours - possible bug
ggbio
10.8 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
2
votes
15
replies
4.4k
views
Annotation of Affy Porcine Gene 1.0 ST array data
limma oligo annotation
updated 5 months ago by • 0 • written 11.0 years ago by • 0
2
votes
3
replies
1.9k
views
HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 180
4
votes
6
replies
3.4k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 10.8 years ago by ▴ 180 • written 11.1 years ago by • 0
0
votes
2
replies
2.1k
views
News: ChIPpeakAnno::getAnnotation get Exons
chippeakanno News
updated 10.8 years ago by ★ 1.3k • written 10.8 years ago by ★ 4.3k
1
vote
5
replies
3.5k
views
plotting interactions in gviz (Chia-Pet, HiC, 5C). New feature?
gviz
updated 10.8 years ago by ▴ 750 • written 11.0 years ago by • 0
2
votes
3
replies
3.3k
views
Help with DESeq2 Multiple Factor Design
deseq2 design multiple factor design
updated 10.8 years ago by ▴ 610 • written 10.8 years ago by • 0
0
votes
1
reply
1.5k
views
Mean Coverage version of stat_coverage and coverage?
grangeslist granges Genomicfeatures bam
10.8 years ago gen ▴ 30
1
vote
1
reply
1.4k
views
Bug in ggbio's geom_alignment when using facet
ggbio facet
updated 10.8 years ago by ★ 11k • written 11.0 years ago by ▴ 20
0
votes
4
replies
1.7k
views
Error in makeTranscriptDbFromGFF
deseq2 genomicfeatures
updated 10.8 years ago by 16k • written 10.8 years ago by • 0
1
vote
1
reply
1.5k
views
Problems with parsing of geom_alignment()'s type column (from ggbio)
ggbio geom_alignment
updated 10.8 years ago by ★ 11k • written 11.0 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Error from BSgenome forge using .2bit file
BSgenome forge 2bit bsgnome forge 2bit file
updated 10.8 years ago by 16k • written 10.8 years ago by • 0
2
votes
1
reply
1.7k
views
How do I create BSgenome Bos_taurus_UMD3.1?
bsgenome forge bovine
updated 10.8 years ago by 16k • written 10.8 years ago by • 0
4
votes
5
replies
4.9k
views
Adding gene names to rlog transformations for heatmaps?
deseq2 gplot
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
2
votes
2
replies
5.2k
views
EdgeR with normalized data
r edger de
updated 10.8 years ago by ★ 13k • written 10.8 years ago by • 0
0
votes
0
replies
1.2k
views
Biseq clusterSites/filterBySharedRegions.R typo in manual with easy fix
typo manual fix
10.8 years ago mnaymik ▴ 10
3
votes
2
replies
2.3k
views
Gviz - Arrow Head Resizing
gviz
10.8 years ago bst ▴ 10
0
votes
2
replies
4.0k
views
the most efficient R package to storage sparse matrix
package sparse matrix
10.9 years ago • updated 10.8 years ago ywhzau • 0
0
votes
3
replies
1.8k
views
Gviz IdeogramTrack fails if species has no band information
gviz ideogram
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by • 0
0
votes
1
reply
966
views
Citations for TRIGGER
updated 10.8 years ago by ▴ 100 • written 13.1 years ago by ▴ 40
2
votes
10
replies
3.7k
views
Package qvalue - can it be installed without TCL-TK support?
qvalue qvalue
updated 10.8 years ago by ▴ 100 • written 11.6 years ago by ▴ 170
1
vote
3
replies
2.5k
views
Error using RSubread to buildIndex with large Fasta
rsubread
updated 10.8 years ago by ★ 3.6k • written 10.8 years ago by ▴ 30
15
votes
12
replies
79k
views
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 130
0
votes
1
reply
1.3k
views
AWS set up
bioconductor aws
10.8 years ago zhihuang • 0
13
votes
20
replies
15k
views
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
EdgeR TCGA normalized count
updated 10.8 years ago by ▴ 130 • written 10.8 years ago by ▴ 20
2
votes
1
reply
1.2k
views
Plot coverage in a presentation for GenomicFeatures
genomicfeatures
updated 10.8 years ago by ★ 11k • written 10.8 years ago by ▴ 20
2
votes
6
replies
4.0k
views
voom/limma contrast for comparing one level against base-line
limma voom contrast
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 80
1
vote
2
replies
2.0k
views
MEDIPS - RPKM
MEDIPS
10.8 years ago malbert1 • 0
2
votes
4
replies
2.8k
views
ReactomePA : error with gsePathway
ReactomePA gsePathway
updated 10.8 years ago by ★ 1.2k • written 10.8 years ago by ▴ 140
0
votes
2
replies
2.2k
views
Calculate the expression of gene
genomicranges iranges
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 20
3
votes
2
replies
4.0k
views
TMM normalisation method
Csaw csaw
10.8 years ago sergio.espeso-gil • 0
3
votes
3
replies
2.0k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version release library
updated 10.8 years ago by ▴ 400 • written 10.8 years ago by ★ 1.6k
0
votes
2
replies
2.7k
views
Error reading vcf converted from bed file
readvcf plink file conversion bed bioc-devel
10.8 years ago mjsduncan • 0
46,712 results • Page 464 of 935
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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