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0
votes
1
reply
893
views
p value after enrichPeakOverlap analysis in ChIPseeker
ChIPseeker
updated 9 months ago by
kyliecode
• 0 • written 3.8 years ago by
mwong043
• 0
0
votes
1
reply
891
views
WGCNA soft thresholding suggesting a power of 1
independence
thresholding
WGCNA
connectivity
scale
updated 10 weeks ago by
boczniak767
▴ 720 • written 15 months ago by
Kim
• 0
1
vote
3
replies
874
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 17 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
1
vote
5
replies
865
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 10 months ago by
Alejandro Reyes
★ 1.9k • written 10 months ago by
zhangpeng1202
• 0
0
votes
0
replies
848
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
0
votes
6
replies
845
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
11 months ago • updated 10 months ago
simone.tiberi
• 0
0
votes
1
reply
841
views
Point mutation to corresponding amino acid
point mutation
aminoacid
translation
updated 7 months ago by
jtremblay514
• 0 • written 5.8 years ago by
chandu.ncbs
• 0
0
votes
3
replies
837
views
How can we use the organism database created by makeorgPackageFromNCBI to KEGG and GO analysis using clusterprofiler package.
clusterProfiler
OrganismDb
updated 5 months ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
Aastha Kapoor
• 0
0
votes
2
replies
815
views
Finding Modules with WGCNA - Collapsing Biological Replicates in Expression Data - Then Finding Eigengenes on Previously Found Modules
WGCNA
Module Detection
updated 3 months ago by
dima11i
• 0 • written 4.5 years ago by
vsa1111
• 0
0
votes
2
replies
809
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 3 months ago by
QINYAN
• 0 • written 3.7 years ago by
Olof.rundquist
• 0
1
vote
2
replies
808
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Yijing
• 0
0
votes
1
reply
798
views
SingleR error with multiple references
SingleR
updated 11 months ago by
Irish
• 0 • written 18 months ago by
carlo
• 0
0
votes
1
reply
797
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 11 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
1
reply
772
views
solution of boot.phylo()'s problem
updated 8 months ago by
Trinh
• 0 • written 17.2 years ago by
Nora Muda
▴ 70
0
votes
3
replies
770
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 7 months ago by
Robert Ivanek
▴ 730 • written 7 months ago by
Michael
• 0
1
vote
4
replies
755
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
Manish
• 0
0
votes
6
replies
754
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 8 weeks ago by
qianyi13
• 0 • written 11 weeks ago by
Pavel
• 0
0
votes
5
replies
750
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
1
vote
2
replies
728
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 10 months ago by
malat1_t
▴ 10
0
votes
1
reply
724
views
plotDAbeeswarm in miloR
miloR
updated 5 months ago by
Ashley_ZH
• 0 • written 2.3 years ago by
dorothy.jrobbert
▴ 30
0
votes
1
reply
723
views
Do you maintain a public Bioconductor mirror?
updated 4 months ago by
kaji331
• 0 • written 12.7 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
3
replies
721
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 10 months ago by
Erik Wright
▴ 150 • written 10 months ago by
Till
▴ 30
2
votes
15
replies
717
views
Problems with enrichGO
clusterProfiler
enrichGO
updated 12 weeks ago by
Michael Love
42k • written 3 months ago by
cinzia.spagnoli
• 0
0
votes
6
replies
715
views
fastMNN reproducibility across machines when using Docker
batchelor
10 months ago
nils.eling
• 0
0
votes
3
replies
698
views
insufficient unique points for computing knee/inflection points
DropletUtils
SingleCellData
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
p.vlachou-efstathiou
• 0
5
votes
2
replies
689
views
outdated GEOmetadb.sqlite
GEOmetadb
14 months ago • updated 3 months ago
Robert Castelo
★ 3.3k
0
votes
1
reply
684
views
gwas power calculation for quantitative traits
power
GWAS
written 2.7 years ago by
rajya82
• 0
1
vote
2
replies
682
views
Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData
WGCNA
consensusnetworks
5 months ago • updated 4 months ago
Levi
• 0
1
vote
2
replies
677
views
Error running run_app('LFQ')
LFQ
DEPpackage
run_app('LFQ')
ShinyApps
DEP
updated 9 months ago by
Ram
▴ 210 • written 10 months ago by
d.kozhevnikova
▴ 10
0
votes
3
replies
674
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by
Keasiykan
• 0
0
votes
4
replies
669
views
Mfuzz package loading issues
Mfuzz
loadingissues
macbook
6 months ago
Jon
• 0
2
votes
2
replies
666
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago
bd2000
▴ 30
0
votes
7
replies
662
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
0
votes
2
replies
644
views
Can't post a job oppurtunity
JobPosting
job
updated 3 months ago by
alexandre.blais
▴ 50 • written 9 months ago by
jlaird1
• 0
0
votes
0
replies
635
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
8 months ago
NewtoBioconductor
• 0
0
votes
0
replies
628
views
using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
0
votes
1
reply
626
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 8 months ago by
wrab425
• 0 • written 14 months ago by
snijesh
▴ 20
0
votes
1
reply
623
views
affy package and SNP arrays
crlmm
hapmapsnp6
genomewidesnp6Crlmm
affy
updated 10 months ago by
Kevin Blighe
★ 3.9k • written 10 months ago by
Vincent J. Carey, Jr.
6.7k
1
vote
2
replies
623
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
4 months ago
Dan
• 0
0
votes
2
replies
620
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 9 months ago by
Wei Shi
★ 3.6k • written 9 months ago by
amanda.gutierrez
• 0
0
votes
1
reply
617
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 9 months ago by
Mike Smith
★ 6.5k • written 9 months ago by
Catia
• 0
0
votes
0
replies
617
views
MAGECK MLE design matrix
mageck
MAGeCKFlute
11 months ago
Monika
• 0
2
votes
4
replies
612
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
11 months ago
Michael Steinbaugh
▴ 90
0
votes
1
reply
606
views
DNABarcodes: issue with wrong barcode decoding
single-cell sequencing
barcodes
updated 3 months ago by
nk130
• 0 • written 5.0 years ago by
Philip Lijnzaad
▴ 160
0
votes
2
replies
594
views
msa Installation failed - please help
Install
msa
11 months ago
Ido
• 0
0
votes
3
replies
591
views
TPP2D::import2dDataset() does not return value
TPP2D
updated 9 months ago by
nils.kurzawa
▴ 20 • written 9 months ago by
Tobias
▴ 40
0
votes
3
replies
585
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
10 months ago
Alexandros
• 0
0
votes
4
replies
581
views
Pairwise comparison for DEG analysis
limma
updated 9 months ago by
ATpoint
★ 4.1k • written 10 months ago by
Melissa
• 0
0
votes
2
replies
577
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 6 weeks ago by
CHEN
• 0 • written 12 months ago by
Saanchi
• 0
0
votes
0
replies
576
views
conversion a VCF file into a MAF file
VCFArray
maftools
9 months ago
Bogdan
▴ 670
395 results • Page
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Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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