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589
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Single Series Time Course
tissueTreg
2.8 years ago
guang-hui
• 0
0
votes
0
replies
917
views
data truncation with sce2fcs()
CATALYST
2.9 years ago
Shaun
• 0
0
votes
0
replies
472
views
How to draw the MEM matrix of cell annotation
MatrixDiagram
2.9 years ago
shuangshuang
• 0
0
votes
1
reply
955
views
Microarray Data - Matching Probe ID's to Gene Expression Symbols
limma
updated 2.9 years ago by
Kevin Blighe
★ 4.0k • written 2.9 years ago by
Joshua
• 0
1
vote
3
replies
2.0k
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 20 months ago by
Guangchuang Yu
★ 1.2k • written 2.9 years ago by
ruiqi.li
▴ 10
0
votes
0
replies
1.1k
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
2.9 years ago
Jitendra
▴ 10
0
votes
2
replies
1.9k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
2.9 years ago
shuangshuang
• 0
0
votes
0
replies
788
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.9 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
3
replies
2.4k
views
Knee and Inflection of DropletUtils
SingleCell
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
ankuuu
• 0
0
votes
1
reply
724
views
Reference categories for factors
assocTestSingle
GENESIS
written 2.9 years ago by
SuperD
• 0
2
votes
6
replies
5.2k
views
clusterProfiler for KEGG enrichment (non-model species) Over-Representation Analysis
KEGG
clusterProfiler
updated 2.0 years ago by
Guido Hooiveld
★ 4.1k • written 2.9 years ago by
ruiqi.li
▴ 10
0
votes
0
replies
846
views
MAST for single cell ATAC data
MAST
2.9 years ago
zuljiamel1991
▴ 10
1
vote
2
replies
2.8k
views
Error when running GDC_prepare
TCGAbiolinks
2.9 years ago
DevelopingHippo
• 0
0
votes
0
replies
838
views
Merging 2 staining panels
FlowCytometry
flowCore
2.9 years ago
michaela.gregorova13
• 0
0
votes
0
replies
1.2k
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
2.9 years ago
agamemnon
• 0
0
votes
0
replies
671
views
Pipeline error
ramwas
bams
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Anushka
• 0
0
votes
3
replies
2.2k
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 2.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.9 years ago by
Jitendra
▴ 10
0
votes
0
replies
924
views
How to draw module significance barplot?
module_significance
barplot
WGCNA
2.9 years ago
Sooni
▴ 10
5
votes
2
replies
1.3k
views
outdated GEOmetadb.sqlite
GEOmetadb
2.9 years ago • updated 23 months ago
Robert Castelo
★ 3.4k
0
votes
1
reply
1.7k
views
Error: all(unlist(md_cols) %in% names(md)) is not TRUE
cytofWorkflow
updated 2.9 years ago by
helucro
▴ 70 • written 2.9 years ago by
shuangshuang
• 0
0
votes
1
reply
834
views
maxfragmentsize problem
ramwas
ram
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
Anushka
• 0
0
votes
1
reply
752
views
Log of Step 1
log
timer
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
Anushka
• 0
0
votes
1
reply
851
views
Rbam and Rqc files error
Rqc
rbams
rqc
mmusculus
scanbams
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
Anushka
• 0
0
votes
0
replies
662
views
how to convert lncRNA probe name or mRNA probe name to gene symbol
lncRNA
probeID
mRNA
genesymbol
2.9 years ago
Sooni
▴ 10
1
vote
2
replies
1.9k
views
GO.db for Bioconductor 3.17
GO.db
devel
2.9 years ago
Amanda D. Clark
• 0
0
votes
0
replies
804
views
some questions about eliminating efficiency biaes in csaw user's guide
csawUsersGuide
csaw
2.9 years ago
sashu
• 0
0
votes
0
replies
1.2k
views
Subread2.0.3 featureCounts segmentation fault when loading gtf file
Subread
GTF
featureCounts
segmentationfault
2.9 years ago
yao hua
• 0
6
votes
12
replies
3.2k
views
Error when loading DMRcate
DMRcate
2.9 years ago
Bazingastats
• 0
0
votes
1
reply
1.7k
views
part of the volcano plot does not appear.
plot
volcano
volcanoplot
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
Sooni
▴ 10
0
votes
0
replies
1.4k
views
Problem with loading rtracklayer
rtracklayer
updated 2.9 years ago by
shepherl
4.3k • written 2.9 years ago by
jiahe.janet
• 0
0
votes
1
reply
1.1k
views
Installation of SingleR fails with GCC 8.2.0, Centos 7 - XPtr(Rcpp::Vector<19>::Proxy)
SimpleR
updated 2.8 years ago by
Jovana Maksimovic
▴ 20 • written 2.9 years ago by
cisbio
• 0
0
votes
0
replies
1.0k
views
VariantAnnotation::readVcf incorrectly processes GATK Mutect2 vcf INFO field AS_SB_TABLE
vcf
AS_SB_TABLE
readVcf
Mutect2
VariantAnnotation
2.9 years ago
therealgenna
• 0
0
votes
0
replies
776
views
XCMS normalization
xcms
2.9 years ago
T.RU
• 0
0
votes
0
replies
896
views
Multiple way network preservation
wgcna
2.9 years ago
madzayasodara
• 0
0
votes
14
replies
3.5k
views
Trouble downloading dada2
dada
dada2
2.9 years ago
elliottchon97
• 0
0
votes
0
replies
809
views
Dereplicate DNA sequences while taking into account the corresponding taxonomy
Biostrings
2.9 years ago
Gilles
• 0
1
vote
2
replies
1.7k
views
snpsBySeqname() and snpsByOverlaps() functions in BSgenome package did not work in my computer
BSgeome
2.9 years ago
sunyingkai
• 0
0
votes
0
replies
1.2k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
2.9 years ago
gilliangoobie
• 0
0
votes
0
replies
663
views
Visualize blastx output in R
blast
2.9 years ago
kvigil
• 0
0
votes
0
replies
690
views
installing flowPloidy
flowPloidyData
flowPloidy
2.9 years ago
Punn
• 0
0
votes
0
replies
1.2k
views
BiomaRt - Problem to access homolog lists
biomaRt
ensembldb
2.9 years ago
ginie.dub
• 0
0
votes
4
replies
1.2k
views
Load templates from openPrimeR
PCRmultiplex
openPrimeR
2.9 years ago
Santiago Edilberto
• 0
0
votes
0
replies
796
views
Using MBD score in MBD-seq
mbd-seq
MethylSeq
2.9 years ago
Marianna
▴ 20
0
votes
0
replies
997
views
WGCNA TOM file empty
WGCNA
TOM
2.9 years ago
gianni.drm
• 0
0
votes
0
replies
868
views
Rsamtools pileup help
Rsamtools
pileup
2.9 years ago
JoeMG
• 0
1
vote
1
reply
1.2k
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 2.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.9 years ago by
eliska.ochodkova
▴ 10
1
vote
4
replies
1.3k
views
Genomics data
mygene
offtopic
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Shila
• 0
0
votes
0
replies
1.2k
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
2.9 years ago
pawel.malecki
• 0
0
votes
0
replies
1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
2.9 years ago
gianni.drm
• 0
0
votes
0
replies
701
views
need help with methylation locus identification and YAMA
segmentSeq
2.9 years ago
Poonam
• 0
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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