Showing : GeneExpression • reset
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Reading gene expression data in GPR format and converting it to xlsx format
BiocWorkflowTools BiomedicalInformatics GeneExpression
updated 8 months ago by 68k • written 8 months ago by • 0
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564
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WGCNA sample-data preprocessing order
Microarray WGCNA GeneExpression
updated 9 months ago by ★ 5.0k • written 10 months ago by • 0
2
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1
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523
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 12 months ago by 68k • written 12 months ago by • 0
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517
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Is my time course analysis with DESeq2 valid?
GeneExpression DESeq2 TimeCourse
updated 12 months ago by 43k • written 12 months ago by • 0
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1.4k
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
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3
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"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression Clustering ctsGE
21 months ago jbgnielson • 0
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.0 years ago • updated 24 months ago Manthos • 0
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4.8k
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TPM from STAR mapped counts
GeneExpression GenomicFeatures RNA-Seq TPM
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
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1
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1.1k
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
2.3 years ago Arianna • 0
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3.8k
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FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
GeneExpression
2.6 years ago CDSPARKS ▴ 30
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1.1k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by • 0
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1
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4.8k
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DESeq2 after Seurat analysis on integrated datasets
DESeq2 SingleCell GeneExpression Seurat
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
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Comparing different method for DESEQ2
DESeq2 GeneExpression
updated 3.1 years ago by 43k • written 3.2 years ago by • 0
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3
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CountOverlap
GeneExpression ChIPSeqData
updated 3.1 years ago by 68k • written 3.2 years ago by ▴ 20
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766
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Free Gibbson energy RNA doublex
GeneExpression RNAinteract
3.3 years ago Tamina • 0
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954
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Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression methylation
3.4 years ago hlee ▴ 10
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1.4k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 3.4 years ago by ★ 1.4k • written 3.4 years ago by • 0
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985
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Error "DESeqDataSetFromMatrix" function not found
GeneExpression
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by • 0
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1
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1.1k
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Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression NanoporeRNASeq DESeq2 GeneExpression DEVis
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
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1.2k
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Error while using champ.SVD function
GeneExpression
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by • 0
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1
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2.5k
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GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 3.2 years ago by • 0 • written 3.6 years ago by • 0
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1.3k
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Volcano plot: Putting calculated values in legend
GeneExpression
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
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2
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 3.7 years ago by • 0 • written 3.7 years ago by ▴ 10
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2.8k
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Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
4.1 years ago p.l.chen • 0
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2
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9.1k
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Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 4.1 years ago by ★ 5.0k • written 4.1 years ago by ▴ 10
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Gene expression in R
limma edgeR Biobase GeneExpression
4.2 years ago sogol.bouyeh • 0
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2
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2.4k
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
4.4 years ago SUMIT • 0
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18
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4.2k
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DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 4.5 years ago by 43k • written 4.6 years ago by • 0
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3
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1.4k
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
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1
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1.0k
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Accounting for fish body mass in DE?
GeneExpression edgeR
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
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1.1k
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Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 5.0 years ago by ▴ 510 • written 5.0 years ago by • 0
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3
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1.5k
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Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
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925
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
5.0 years ago coobzie • 0
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5
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14k
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 60
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4
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2.9k
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Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 7.6 years ago by 21k • written 7.6 years ago by ▴ 10
3
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1
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2.6k
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Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 8.0 years ago by ▴ 830 • written 8.0 years ago by • 0
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4
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2.3k
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ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 8.3 years ago by ▴ 120 • written 8.3 years ago by ▴ 60
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3
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1.6k
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General suggestions regarding gene expression
geneexpression
updated 8.8 years ago by 53k • written 8.8 years ago by • 0
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1.2k
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Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
8.9 years ago shaheryar • 0
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1.5k
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Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
9.2 years ago namilio • 0
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1.5k
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Methylation and gene expression
methylation geneexpression
9.3 years ago Asma rabe ▴ 290
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2
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1.5k
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Methylation and gene expression data
methylation geneexpression
updated 9.5 years ago by ▴ 130 • written 9.5 years ago by ▴ 290
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3
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2.0k
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error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 20
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6
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2.4k
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how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
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1.6k
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Error in MetaQC R package.
r metaqc microarray geneexpression
9.9 years ago Agaz Hussain Wani ▴ 260
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3
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2.6k
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problem with WGCNA
geneexpression
updated 10.0 years ago by ★ 3.0k • written 10.0 years ago by • 0
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5
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2.2k
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heatmap in R
r language microarray geneexpression
updated 10.2 years ago by ★ 1.1k • written 10.2 years ago by • 0
1
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1
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1.5k
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gene expression data analysis
microarray geneexpression
updated 10.2 years ago by 68k • written 10.2 years ago by • 0
1
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1
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5.9k
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NA p and p adjusted value
geneexpression
updated 10.3 years ago by ★ 3.0k • written 10.3 years ago by • 0
1
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2
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7.2k
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explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 10.3 years ago by ★ 29k • written 10.3 years ago by ▴ 10
56 results • Page 1 of 2
Recent ...
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Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
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Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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