Showing : GeneExpression • reset
2
votes
1
reply
201
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 5 weeks ago by 67k • written 5 weeks ago by • 0
0
votes
1
reply
231
views
Is my time course analysis with DESeq2 valid?
GeneExpression DESeq2 TimeCourse
updated 6 weeks ago by 43k • written 6 weeks ago by • 0
4
votes
9
replies
820
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
2
votes
3
replies
749
views
"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression Clustering ctsGE
10 months ago jbgnielson • 0
2
votes
2
replies
715
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
13 months ago Manthos • 0
2
votes
3
replies
3.4k
views
TPM from STAR mapped counts
GeneExpression GenomicFeatures RNA-Seq TPM
updated 15 months ago by 52k • written 15 months ago by • 0
0
votes
1
reply
764
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
17 months ago Arianna • 0
2
votes
2
replies
2.8k
views
FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
GeneExpression
20 months ago CDSPARKS ▴ 30
0
votes
1
reply
890
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 22 months ago by ★ 4.6k • written 22 months ago by • 0
0
votes
1
reply
3.7k
views
DESeq2 after Seurat analysis on integrated datasets
DESeq2 SingleCell GeneExpression Seurat
updated 22 months ago by ★ 4.6k • written 22 months ago by • 0
2
votes
4
replies
2.2k
views
Comparing different method for DESEQ2
DESeq2 GeneExpression
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
0
votes
3
replies
1.3k
views
CountOverlap
GeneExpression ChIPSeqData
updated 2.3 years ago by 67k • written 2.3 years ago by ▴ 20
0
votes
0
replies
591
views
Free Gibbson energy RNA doublex
GeneExpression RNAinteract
2.4 years ago Tamina • 0
1
vote
0
replies
774
views
Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression methylation
2.5 years ago hlee ▴ 10
0
votes
2
replies
1.2k
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.5 years ago by ★ 1.4k • written 2.5 years ago by • 0
0
votes
1
reply
750
views
Error "DESeqDataSetFromMatrix" function not found
GeneExpression
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
1
reply
840
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression NanoporeRNASeq DESeq2 GeneExpression DEVis
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
1
vote
1
reply
990
views
Error while using champ.SVD function
GeneExpression
updated 2.7 years ago by ▴ 780 • written 2.7 years ago by • 0
0
votes
1
reply
2.2k
views
GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 2.3 years ago by • 0 • written 2.7 years ago by • 0
0
votes
0
replies
1.1k
views
Volcano plot: Putting calculated values in legend
GeneExpression
updated 2.7 years ago by ★ 4.0k • written 2.7 years ago by • 0
2
votes
2
replies
1.0k
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.8 years ago by • 0 • written 2.8 years ago by ▴ 10
0
votes
2
replies
2.4k
views
Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
3.2 years ago p.l.chen • 0
2
votes
2
replies
7.8k
views
Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 3.2 years ago by ★ 4.6k • written 3.2 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Gene expression in R
limma edgeR Biobase GeneExpression
3.3 years ago sogol.bouyeh • 0
2
votes
2
replies
2.0k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.5 years ago SUMIT • 0
5
votes
18
replies
3.5k
views
DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 3.6 years ago by 43k • written 3.7 years ago by • 0
1
vote
3
replies
1.2k
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
1
vote
1
reply
856
views
Accounting for fish body mass in DE?
GeneExpression edgeR
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
0
votes
1
reply
881
views
Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 4.1 years ago by ▴ 510 • written 4.1 years ago by • 0
1
vote
3
replies
1.2k
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
0
votes
0
replies
759
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.1 years ago coobzie • 0
2
votes
5
replies
13k
views
Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 60
1
vote
4
replies
2.4k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 6.7 years ago by 21k • written 6.7 years ago by ▴ 10
3
votes
1
reply
2.0k
views
Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 7.1 years ago by ▴ 830 • written 7.1 years ago by • 0
1
vote
4
replies
2.1k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 7.4 years ago by ▴ 120 • written 7.4 years ago by ▴ 60
1
vote
3
replies
1.4k
views
General suggestions regarding gene expression
geneexpression
updated 7.9 years ago by 52k • written 7.9 years ago by • 0
0
votes
0
replies
1.1k
views
Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
8.0 years ago shaheryar • 0
0
votes
0
replies
1.3k
views
Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
8.4 years ago namilio • 0
0
votes
0
replies
1.3k
views
Methylation and gene expression
methylation geneexpression
8.4 years ago Asma rabe ▴ 290
0
votes
2
replies
1.3k
views
Methylation and gene expression data
methylation geneexpression
updated 8.6 years ago by ▴ 130 • written 8.6 years ago by ▴ 290
0
votes
3
replies
1.7k
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 8.8 years ago by 67k • written 8.8 years ago by ▴ 20
1
vote
6
replies
2.1k
views
how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 8.8 years ago by 43k • written 8.9 years ago by • 0
0
votes
1
reply
1.4k
views
Error in MetaQC R package.
r metaqc microarray geneexpression
9.0 years ago Agaz Hussain Wani ▴ 260
0
votes
3
replies
2.1k
views
problem with WGCNA
geneexpression
updated 9.1 years ago by ★ 3.0k • written 9.1 years ago by • 0
2
votes
5
replies
1.9k
views
heatmap in R
r language microarray geneexpression
updated 9.4 years ago by ★ 1.0k • written 9.4 years ago by • 0
1
vote
1
reply
1.3k
views
gene expression data analysis
microarray geneexpression
updated 9.4 years ago by 67k • written 9.4 years ago by • 0
1
vote
1
reply
5.4k
views
NA p and p adjusted value
geneexpression
updated 9.4 years ago by ★ 3.0k • written 9.4 years ago by • 0
1
vote
2
replies
6.4k
views
explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 9.4 years ago by ★ 28k • written 9.4 years ago by ▴ 10
0
votes
3
replies
12k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 9.5 years ago by ▴ 840 • written 9.5 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
10.0 years ago Peter.Wood • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to rohitsatyam102 ▴ 20
Popular Question to Hervé Pagès 16k
Teacher to dsull ▴ 40
Popular Question to bpshtiwan ▴ 10
Locations • All
India, 20 minutes ago
Sweden, 40 minutes ago
UPF, Barcelona, Spain, 1 hour ago
Pakistan, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 398 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6