Showing : Network • reset
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.7 years ago by ▴ 40
8
votes
4
replies
6.9k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 9.7 years ago by ★ 3.0k • written 9.7 years ago by ▴ 180
7
votes
1
reply
3.5k
views
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
rnaseq network limma
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ▴ 250
7
votes
9
replies
3.7k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 16 months ago by ★ 3.0k • written 5.0 years ago by ▴ 10
5
votes
2
replies
4.2k
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 4.3 years ago by ★ 3.9k • written 4.3 years ago by ▴ 30
5
votes
14
replies
4.8k
views
Connection Refused on port 9000 - RCytoscape
rcytoscape r network graphBAM object
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by ▴ 50
4
votes
3
replies
924
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 5.0 years ago by ★ 3.0k • written 5.0 years ago by ▴ 80
4
votes
2
replies
1.1k
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iSEE - Custom Panel
Network GeneNetwork iSEE
updated 3.5 years ago by ★ 28k • written 3.5 years ago by • 0
3
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2
replies
5.1k
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Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 24 months ago by ▴ 10 • written 3.8 years ago by ▴ 80
2
votes
6
replies
4.7k
views
Error running TOMplot in WGCNA package
wgcna network
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
2
votes
4
replies
1.8k
views
Case-control study using WGCNA
wgcna network rna-seq
4.4 years ago ag1805x ▴ 80
2
votes
1
reply
1.4k
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
2
votes
1
reply
805
views
WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 20 months ago by ▴ 50 • written 20 months ago by ▴ 10
2
votes
0
replies
516
views
Quality Metrics for Graph Clustering for Biological Networks
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3.9 years ago hamza_karakurt ▴ 50
2
votes
5
replies
1.4k
views
runing NetBenchmark on my own datasets
software error network
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by ▴ 40
1
vote
1
reply
1.5k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 7.9 years ago by ▴ 120 • written 7.9 years ago by ▴ 660
1
vote
1
reply
855
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 4 months ago by ▴ 20 • written 4 months ago by ▴ 90
1
vote
1
reply
1.5k
views
WGCNA gene clusters vs eigengenes
wgcna network coexpression eigengenes
updated 4.7 years ago by 50k • written 4.7 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
updated 6.5 years ago by ▴ 730 • written 6.6 years ago by ▴ 40
1
vote
2
replies
1.3k
views
Additional high-scoring subnetworks in BioNet
bionet network
updated 7.9 years ago by ▴ 120 • written 7.9 years ago by ▴ 660
1
vote
10
replies
2.1k
views
Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 17 months ago by • 0
1
vote
2
replies
4.0k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
1
vote
7
replies
2.7k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny network interactions
9.5 years ago pshannon ▴ 100
1
vote
1
reply
1.4k
views
WGCNA_ Eigengene and sample complications correlations
Network Network
updated 9.9 years ago by ★ 3.0k • written 9.9 years ago by ▴ 130
1
vote
2
replies
2.9k
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cnetplot() - library(clusterProfiler)
clusterProfiler network
8.9 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.1k
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JOB: Biostatistican
Microarray Genetics Proteomics Network Kidney Microarray Genetics Proteomics Network
20.6 years ago Robert Campanell ▴ 10
0
votes
0
replies
1.1k
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[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
863
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B value cutoff in LIMMA
Network Cancer limma Network Cancer limma
18.1 years ago Gordon Smyth 50k
0
votes
0
replies
669
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Problem downloading Bioconductor
Network Network
18.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
651
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Greek characters and subscripts in network graphs
Network Rgraphviz Network Rgraphviz
17.5 years ago Martin Henry H. Stevens ▴ 10
0
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0
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1.1k
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Biocore response to Affymetrix data format changes
Microarray GO Network Cancer cdf affy PROMISE Microarray GO Network Cancer cdf affy
20.9 years ago Kulp, David ▴ 20
0
votes
0
replies
1.1k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
11.7 years ago Seyed Ahmad Mousavi ▴ 10
0
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0
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757
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no connection to biol
Network Network
18.2 years ago Francois Pepin ★ 1.3k
0
votes
3
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1.9k
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Drawing network graphs (i.e. nodes and edges)
Network Network
updated 18.3 years ago by ▴ 360 • written 18.3 years ago by ▴ 170
0
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0
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1.2k
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Affymetrix Software Development Conference Early Registration rat es - final days
SNP GO Network BEAT SNP GO Network BEAT
21.1 years ago DevNet ▴ 20
0
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0
replies
661
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need a neural network package for microarray data analysis
Microarray Network Microarray Network
18.4 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
831
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Bug in maNormNN
Microarray Normalization GO Visualization Network nnNorm Microarray Normalization GO
18.5 years ago Tarca, Adi ▴ 570
0
votes
1
reply
913
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Re: Try to run a lots of chips: 32 bits vs 64 bits
Normalization GO Network Normalization GO Network
updated 21.2 years ago by ▴ 530 • written 21.2 years ago by ▴ 430
0
votes
0
replies
751
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BioPAX/SBPAX import for MicroArray Analysis and Hypothesis Building
Microarray Network Microarray Network
12.0 years ago Oliver Ruebenacker ▴ 110
0
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0
replies
1.3k
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BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
17.6 years ago Seth Falcon ★ 7.4k
0
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0
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912
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help with bayesian network
Network Bayesian Network Bayesian
18.7 years ago goldoni ▴ 10
0
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2
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921
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KEGG analysis
Network Cancer Network Cancer
15.1 years ago Daniel Brewer ★ 1.9k
0
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0
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2.0k
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vacancy postdoc or PhD in the Netherlands
Metabolomics Network Organism Metabolomics Network Organism
15.1 years ago Hendriks, M. ▴ 10
0
votes
2
replies
1.2k
views
Affymetrix MASv5 code & sample data
Network Network
updated 18.9 years ago by ★ 1.8k • written 18.9 years ago by ▴ 50
0
votes
3
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1.4k
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building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 270
0
votes
0
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2.0k
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Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
15.0 years ago Paul Hammer ▴ 220
0
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0
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620
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Software Demo for Summer Research Grant
Network Network
15.0 years ago RICHARD SEGALL ▴ 10
0
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0
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1.0k
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bioinformatics programmer position
Network Network
14.9 years ago Wall, Dennis Paul ▴ 80
0
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0
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629
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Invitation to connect on LinkedIn
Network Network
14.7 years ago Lingsheng Dong ▴ 80
0
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0
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Pathview question
Network convert pathview Network convert pathview
10.1 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
Recent ...
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Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30
I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k
The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…
Answer: Store output of matchPWM() by mat149 ▴ 70
hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0
thanks! you have saved me so much time
Votes
Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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Scholar to mat149 ▴ 70
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