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S4Vectors
•
reset
0
votes
1
reply
70
views
Version 3.15 S4Vectors packages are missing
S4Vectors
updated 3 days ago by
shepherl
3.9k • written 4 days ago by
bounlu
• 0
2
votes
1
reply
277
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by
Hervé Pagès
16k • written 5 months ago by
Dario Strbenac
★ 1.5k
0
votes
2
replies
563
views
Using dplyr commands with DataFrame objects
S4Vectors
6 months ago
GE
• 0
5
votes
6
replies
650
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.2k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 12 months ago by
Michael Steinbaugh
▴ 90
0
votes
1
reply
652
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors
Aspli
updated 15 months ago by
Sophie
• 0 • written 15 months ago by
salvocomplicazioni1
• 0
11
votes
17
replies
2.3k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors
DataFrame
haven_labelled
haven
updated 17 months ago by
Danny Smith
▴ 20 • written 17 months ago by
Daniel E. Weeks
▴ 30
0
votes
3
replies
1.3k
views
How can i fix this problem in R
S4Vectors
DESeq2
updated 22 months ago by
ATpoint
★ 4.1k • written 22 months ago by
Habib
• 0
1
vote
7
replies
2.3k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors
pagoo
22 months ago
MauriAndres
• 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
hasche
• 0
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.3 years ago by
Hervé Pagès
16k • written 2.4 years ago by
Charles Plessy
▴ 180
2
votes
3
replies
925
views
S4Vectors, strange metadata behavior
GRangesList
S4Vectors
updated 2.5 years ago by
Hervé Pagès
16k • written 2.5 years ago by
hauken_heyken
▴ 80
0
votes
6
replies
1.8k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
2.6 years ago • updated 2.5 years ago
Richard
• 0
3
votes
2
replies
2.6k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by
James W. MacDonald
65k • written 2.9 years ago by
Dario Strbenac
★ 1.5k
2
votes
1
reply
874
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by
Marcel Ramos
690 • written 2.9 years ago by
Dario Strbenac
★ 1.5k
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
ilysR
• 0
2
votes
0
replies
709
views
News:
BioC2021 organizing committee
BioC2021
S4Vectors
3.5 years ago
Levi Waldron
★ 1.1k
1
vote
11
replies
1.7k
views
Error uploading deseq2
deseq2
S4Vectors
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
margarita.bogorad
• 0
2
votes
9
replies
1.7k
views
S4Vectors not loading
S4Vectors
4.2 years ago
Panos Balomenos
• 0
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors
GenomicRanges
BiocManager
4.6 years ago
james.dalgleish
▴ 30
0
votes
1
reply
769
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
4.7 years ago
Aditya
▴ 160
1
vote
1
reply
800
views
Checking if to DataFrames are identical
S4Vectors
DataFrame
4.7 years ago
maltethodberg
▴ 180
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors
iranges
updated 4.7 years ago by
Michael Lawrence
★ 11k • written 4.7 years ago by
Michael Steinbaugh
▴ 90
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges
rtracklayer
VariantAnnotation
S4Vectors
SummarizedExperiment
updated 4.8 years ago by
Steve Lianoglou
★ 13k • written 4.8 years ago by
james.dalgleish
▴ 30
0
votes
2
replies
1.4k
views
S4Vectors (and others) install error
s4vectors
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
z.crane-smith
• 0
5
votes
2
replies
917
views
DataFrame after splitting and back
DataFrame
S4Vectors
updated 5.0 years ago by
Michael Lawrence
★ 11k • written 5.0 years ago by
Laurent Gatto
1.6k
3
votes
12
replies
2.5k
views
Trouble installing GOSemSim
GOSemSim
S4Vectors
5.1 years ago
sergi.picart
▴ 20
5
votes
10
replies
2.2k
views
caught segfault error when loading S4Vectors package in R
R
S4Vectors
segfault
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
ecg1g15
▴ 20
0
votes
2
replies
1.2k
views
DataFrame matrix subsetting
DataFrame
subsetting
S4Vectors
updated 5.3 years ago by
Hervé Pagès
16k • written 5.3 years ago by
felix.ernst
• 0
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges
S4Vectors
dplyr
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
liz.ingsimmons
▴ 140
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Momo
• 0
0
votes
1
reply
1.5k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors
R-3.5.1
5.4 years ago
zhang303
• 0
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2
S4Vectors
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
roghaiyeh.safari
• 0
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
0
votes
0
replies
968
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.9 years ago
endrebak85
▴ 40
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
TriS
▴ 200
2
votes
1
reply
889
views
Adding a column to a class that contains DataFrame
s4vectors
6.3 years ago
Michael Love
41k
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
KRA
• 0
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors
hits
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
maltethodberg
▴ 180
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation
s4vectors
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
dchmiller
• 0
5
votes
3
replies
3.7k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2
deseq
merge data frames
cbind
s4vectors
updated 6.6 years ago by
Michael Love
41k • written 6.6 years ago by
kirannbishwa01
▴ 10
1
vote
0
replies
1.3k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors
bumphunter
txdb.hsapiens.ucsc.hg38.knowngene
6.6 years ago
Leonardo Collado Torres
★ 1.0k
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors
ifelse
updated 6.8 years ago by
balwierz
▴ 40 • written 8.7 years ago by
Peter Langfelder
★ 3.0k
1
vote
1
reply
955
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
fedor
• 0
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors
dataframe
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
Welliton de Souza
▴ 70
3
votes
8
replies
2.5k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors
Matrix
7.2 years ago
peter.kharchenko
▴ 30
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package
s4vectors
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
my4
▴ 10
0
votes
1
reply
956
views
DataFrame showAsCell function
s4vectors
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
vedran.franke
• 0
5
votes
5
replies
1.4k
views
How to extract out wanted IntegerList more elegantly from nested list?
r
s4vectors
integerlist
iranges
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
jian_liangli
• 0
2
votes
1
reply
939
views
Question about parallel manipulation on CharacterList objects
s4vectors
IRanges
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
li lilingdu
▴ 450
50 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
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Comment: Too many significant genes when integrating gtex and tcga
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