Showing : TopGo • reset
0
votes
3
replies
1.1k
views
TopGO question
topGO top
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
5
replies
1.0k
views
Error when running topGO with KS statistic and elim agorithm
topGO
16 months ago A. denDekker • 0
1
vote
2
replies
1.1k
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
21 months ago Dan • 0
0
votes
2
replies
1.4k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 24 months ago by 68k • written 24 months ago by • 0
0
votes
1
reply
938
views
library(topGO) query
topGO scRNAseq
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
1
vote
1
reply
1.0k
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 2.4 years ago by ▴ 40 • written 2.4 years ago by • 0
0
votes
1
reply
1.6k
views
In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
0
replies
827
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.5 years ago Priya • 0
1
vote
1
reply
2.0k
views
topGo error loading data
topGO GO
2.8 years ago peter • 0
1
vote
0
replies
1.4k
views
adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
3.0 years ago Kevin Gregory ▴ 10
0
votes
4
replies
4.5k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 3.2 years ago by ▴ 760 • written 3.3 years ago by ▴ 30
1
vote
3
replies
3.2k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 60
0
votes
5
replies
3.5k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 30
0
votes
0
replies
928
views
What exactly are Nontrivial node in topGO analysis?
topGO GO
3.5 years ago theophile • 0
0
votes
6
replies
2.1k
views
extract significant gene list from specific GO namber
topGO
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
4
votes
7
replies
3.2k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 3.7 years ago by ▴ 180 • written 3.7 years ago by • 0
0
votes
1
reply
1.6k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.1 years ago by ▴ 40 • written 4.1 years ago by • 0
0
votes
1
reply
1.3k
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
0
votes
1
reply
1.2k
views
topGo GenTable returns result column as character
GenTable topGO
updated 4.6 years ago by 68k • written 4.6 years ago by • 0
0
votes
0
replies
912
views
topGO weight01 method: potential bug in the code
topGO weight01
4.6 years ago Vladimir • 0
1
vote
3
replies
2.0k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 4.7 years ago by ▴ 760 • written 4.7 years ago by • 0
2
votes
0
replies
1.4k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
4.7 years ago Ben ▴ 50
1
vote
1
reply
2.6k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
2
votes
1
reply
2.4k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 4.7 years ago by ▴ 20 • written 12.6 years ago by ▴ 340
1
vote
3
replies
1.9k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
0
votes
0
replies
1.1k
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
4.9 years ago Madza Farias-Virgens • 0
0
votes
7
replies
4.5k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 20
0
votes
4
replies
1.7k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.9 years ago by 68k • written 5.0 years ago by • 0
1
vote
6
replies
2.2k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
3
votes
4
replies
2.3k
views
Different geneset same p-values in topGO
topgo bug
8.7 years ago • updated 5.1 years ago Lluís Revilla Sancho ▴ 760
4
votes
4
replies
2.0k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 5.1 years ago by 53k • written 5.1 years ago by ▴ 120
2
votes
3
replies
1.6k
views
Error in topGO analysis
software error topGO go
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by • 0
0
votes
3
replies
1.4k
views
Use topGOdata in devtools package
topGO devtools R
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
1
vote
1
reply
1.5k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 10
4
votes
8
replies
7.6k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 10
4
votes
8
replies
3.3k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 2.7 years ago by 68k • written 5.4 years ago by ▴ 30
5
votes
7
replies
1.7k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
5.4 years ago abf ▴ 30
0
votes
1
reply
1.0k
views
Missing ALL library in BiocManager using topGO
topGO
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
1
vote
3
replies
2.2k
views
TopGO significant genes
TopGO GO
5.5 years ago Al-a ▴ 10
0
votes
14
replies
3.5k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
1
reply
1.3k
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
6.2 years ago s.bourne • 0
3
votes
3
replies
1.8k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
2
votes
2
replies
2.8k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 60
0
votes
3
replies
1.7k
views
usage of topGO after limma
limma topGO microarray
updated 6.5 years ago by 53k • written 6.5 years ago by • 0
0
votes
0
replies
1.5k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
6.6 years ago psutton • 0
1
vote
1
reply
1.5k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
6.7 years ago David ROUX ▴ 20
0
votes
1
reply
2.0k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
6.8 years ago natske ▴ 10
2
votes
6
replies
2.6k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
3
votes
9
replies
6.6k
views
topGO "invalid argument to unary operator"
software error topgo
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
0
votes
0
replies
1.5k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
7.0 years ago Dave Th. • 0
211 results • Page 1 of 5
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
United States, just now
United States, 9 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Poland, 2 hours ago
Traffic: 526 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6