Showing : annotation • reset
5
votes
13
replies
1.6k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
7 weeks ago KABILAN • 0
0
votes
1
reply
225
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 10 weeks ago by 67k • written 10 weeks ago by • 0
0
votes
0
replies
307
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
3 months ago Aleena ▴ 30
1
vote
2
replies
838
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
5 months ago ronin • 0
2
votes
2
replies
583
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
6 months ago pcantalupo ▴ 10
1
vote
6
replies
963
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 8 months ago by ▴ 200 • written 8 months ago by • 0
2
votes
2
replies
766
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 8 months ago by ▴ 10
0
votes
0
replies
488
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
10 months ago nilanjanamani88 • 0
0
votes
5
replies
2.3k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.9 years ago by ★ 13k
5
votes
11
replies
4.7k
views
How to annotate gene names for genomic coordinates?
annotation
written 9.5 years ago by • 0
0
votes
1
reply
767
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 14 months ago by ▴ 780 • written 14 months ago by • 0
1
vote
0
replies
984
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
15 months ago kayla.interdonato ▴ 160
0
votes
1
reply
6.0k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 15 months ago by 67k • written 15 months ago by • 0
3
votes
4
replies
967
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 17 months ago by 67k • written 17 months ago by • 0
2
votes
4
replies
1.4k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
19 months ago • updated 18 months ago RuBBiT0 ▴ 10
0
votes
2
replies
1.2k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 19 months ago by 67k • written 19 months ago by • 0
0
votes
4
replies
1.6k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
19 months ago Michael Steinbaugh ▴ 90
0
votes
0
replies
793
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
20 months ago ahiser • 0
0
votes
3
replies
989
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
20 months ago christian.dina • 0
0
votes
0
replies
1000
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
21 months ago kayla.interdonato ▴ 160
2
votes
1
reply
724
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 22 months ago by 67k • written 22 months ago by • 0
0
votes
1
reply
1.1k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 22 months ago by 67k • written 22 months ago by ▴ 50
3
votes
3
replies
1.6k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 22 months ago by ★ 4.1k • written 22 months ago by ▴ 10
0
votes
1
reply
721
views
Bioconductor tool for curating annotations?
Annotation
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 180
3
votes
2
replies
2.8k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
22 months ago m-bihie ▴ 10
1
vote
9
replies
1.7k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 23 months ago by 67k • written 23 months ago by • 0
0
votes
3
replies
1.2k
views
A look inside annotation packages
Annotation
2.0 years ago Ed Siefker ▴ 230
3
votes
2
replies
7.4k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.0 years ago by ▴ 200 • written 7.0 years ago by • 0
2
votes
3
replies
2.3k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 23 months ago by • 0 • written 2.1 years ago by ▴ 10
0
votes
5
replies
2.7k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.2 years ago by ★ 4.1k • written 2.2 years ago by ▴ 30
0
votes
0
replies
1.0k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.2 years ago kayla.interdonato ▴ 160
0
votes
1
reply
752
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
1
vote
3
replies
2.4k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.5 years ago by 67k • written 2.5 years ago by ▴ 60
0
votes
1
reply
1.2k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.7 years ago kayla.interdonato ▴ 160
0
votes
0
replies
784
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.7 years ago Ava • 0
0
votes
1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.7 years ago by ▴ 70 • written 2.8 years ago by ▴ 670
0
votes
0
replies
893
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.9 years ago Amandeep • 0
0
votes
1
reply
1.4k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.9 years ago by ▴ 870 • written 3.0 years ago by • 0
0
votes
1
reply
1.6k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 2.9 years ago by 4.1k • written 2.9 years ago by ▴ 20
0
votes
0
replies
868
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.0 years ago Ahdee ▴ 50
0
votes
2
replies
2.6k
views
getBM error in the biomaRt R package
Annotation
updated 2.3 years ago by • 0 • written 3.1 years ago by • 0
0
votes
1
reply
1.2k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.1 years ago by • 0
0
votes
0
replies
1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.1 years ago Shane • 0
0
votes
1
reply
1.1k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.1 years ago by 67k • written 3.1 years ago by • 0
1
vote
1
reply
1.8k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3.2 years ago by ★ 4.0k • written 5.4 years ago by ▴ 20
0
votes
1
reply
858
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 3.3 years ago by 4.1k • written 3.3 years ago by • 0
3
votes
1
reply
2.6k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
1
vote
1
reply
2.7k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 3.3 years ago by ▴ 290 • written 3.3 years ago by ▴ 10
1
vote
2
replies
3.2k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
5
votes
10
replies
2.6k
views
How to do annotation with Limma
annotation limma
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Limma - using both array and spot weights in lmFit by Gordon Smyth 52k
Was answered here: https://support.bioconductor.org/p/17028/
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by daldabrown9 • 0
For more info visit us on [R350 status check][1] [1]: https://sassagrantstatuscheck.co.za/
Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Votes
FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
Answer: FeatureCounts Output Counts at Exon Level Using Default Settings, want gene leve
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Awards • All
Popular Question to María Calvo • 0
Popular Question to Gordon Smyth 52k
Popular Question to Matt Mulé • 0
Popular Question to shepherl 4.1k
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United Kingdom, 29 minutes ago
UPF, Barcelona, Spain, 59 minutes ago
Italy, 1 hour ago
United States, 2 hours ago
Switzerland, 3 hours ago
Traffic: 346 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6