Showing : annotation • reset
2
votes
4
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253
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 26 days ago by ▴ 10
0
votes
4
replies
9.3k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.4 years ago by • 0
0
votes
5
replies
2.5k
views
Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
written 9.5 years ago by • 0
1
vote
2
replies
1.3k
views
Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 10 months ago by 68k • written 10 months ago by • 0
1
vote
1
reply
489
views
Merging annotation with differential expression output
annotation RNASeqData
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
2
replies
686
views
Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
10 months ago GA ▴ 10
1
vote
2
replies
2.1k
views
help documentation for keytypes in annotationdbi packages
annotation
updated 11 months ago by ▴ 10 • written 5.3 years ago by • 0
0
votes
0
replies
438
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
11 months ago Muhammad • 0
0
votes
1
reply
500
views
affymetrix
genomes Annotation
updated 12 months ago by 68k • written 12 months ago by • 0
5
votes
13
replies
2.6k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
15 months ago KABILAN • 0
0
votes
1
reply
598
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
0
replies
714
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
17 months ago Aleena_Ensembl ▴ 30
1
vote
2
replies
1.2k
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
19 months ago ronin • 0
2
votes
2
replies
1.4k
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
20 months ago pcantalupo ▴ 10
1
vote
6
replies
1.9k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 21 months ago by ▴ 230 • written 22 months ago by • 0
2
votes
2
replies
1.6k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 22 months ago by ▴ 10
0
votes
0
replies
892
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
24 months ago nilanjanamani88 • 0
0
votes
5
replies
2.8k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 12.1 years ago by ★ 13k
5
votes
11
replies
5.5k
views
How to annotate gene names for genomic coordinates?
annotation
written 10.6 years ago by • 0
0
votes
1
reply
1.2k
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
1
vote
0
replies
1.8k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
2.4 years ago kayla.interdonato ▴ 160
3
votes
4
replies
1.4k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
2
votes
4
replies
2.0k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
2.7 years ago RuBBiT0 ▴ 10
0
votes
2
replies
1.9k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
4
replies
2.2k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.7 years ago Michael Steinbaugh ▴ 90
0
votes
0
replies
1.2k
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.8 years ago ahiser • 0
0
votes
3
replies
1.4k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.8 years ago christian.dina • 0
0
votes
0
replies
1.4k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.9 years ago kayla.interdonato ▴ 160
2
votes
1
reply
1.1k
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
1
reply
1.6k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 3.0 years ago by 68k • written 3.0 years ago by ▴ 50
3
votes
3
replies
2.4k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 3.0 years ago by ★ 4.1k • written 3.0 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Bioconductor tool for curating annotations?
Annotation
updated 3.0 years ago by ▴ 760 • written 3.0 years ago by ▴ 180
3
votes
2
replies
3.7k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
3.0 years ago m-bihie ▴ 10
1
vote
9
replies
2.4k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
3
replies
1.6k
views
A look inside annotation packages
Annotation
3.1 years ago Ed Siefker ▴ 230
3
votes
2
replies
9.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 3.1 years ago by ▴ 200 • written 8.1 years ago by • 0
2
votes
3
replies
3.2k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 3.0 years ago by • 0 • written 3.2 years ago by ▴ 10
0
votes
5
replies
3.7k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.3 years ago by ★ 4.1k • written 3.3 years ago by ▴ 30
0
votes
0
replies
1.4k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
3.3 years ago kayla.interdonato ▴ 160
0
votes
1
reply
991
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
1
vote
3
replies
3.4k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.6 years ago by 68k • written 3.6 years ago by ▴ 60
0
votes
1
reply
1.6k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.8 years ago kayla.interdonato ▴ 160
0
votes
0
replies
1.1k
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.8 years ago Ava • 0
0
votes
1
reply
1.4k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.8 years ago by ▴ 70 • written 3.9 years ago by ▴ 670
0
votes
0
replies
1.2k
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
4.0 years ago Amandeep • 0
0
votes
1
reply
2.0k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 4.0 years ago by ▴ 890 • written 4.2 years ago by • 0
0
votes
1
reply
2.2k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 4.0 years ago by 4.3k • written 4.0 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
4.1 years ago Ahdee ▴ 60
0
votes
2
replies
3.5k
views
getBM error in the biomaRt R package
Annotation
updated 3.5 years ago by • 0 • written 4.2 years ago by • 0
0
votes
1
reply
1.6k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.2 years ago by • 0
1,979 results • Page 1 of 40
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Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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