Showing : annotation • reset
5
votes
13
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1.5k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
24 days ago • updated 22 days ago KABILAN • 0
0
votes
1
reply
193
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 5 weeks ago by 67k • written 6 weeks ago by • 0
0
votes
0
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258
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
11 weeks ago Aleena ▴ 30
1
vote
2
replies
815
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
4 months ago ronin • 0
2
votes
2
replies
530
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
5 months ago pcantalupo ▴ 10
1
vote
6
replies
901
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 7 months ago by ▴ 200 • written 7 months ago by • 0
2
votes
2
replies
719
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 7 months ago by ▴ 10
0
votes
0
replies
456
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
9 months ago nilanjanamani88 • 0
0
votes
5
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2.3k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.9 years ago by ★ 13k
5
votes
11
replies
4.6k
views
How to annotate gene names for genomic coordinates?
annotation
written 9.4 years ago by • 0
0
votes
1
reply
741
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 13 months ago by ▴ 780 • written 13 months ago by • 0
1
vote
0
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908
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
13 months ago kayla.interdonato ▴ 160
0
votes
1
reply
5.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 14 months ago by 67k • written 14 months ago by • 0
3
votes
4
replies
945
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 16 months ago by 67k • written 16 months ago by • 0
2
votes
4
replies
1.3k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
17 months ago RuBBiT0 ▴ 10
0
votes
2
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1.1k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
4
replies
1.5k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
18 months ago Michael Steinbaugh ▴ 90
0
votes
0
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769
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
19 months ago ahiser • 0
0
votes
3
replies
963
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
19 months ago christian.dina • 0
0
votes
0
replies
949
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
20 months ago kayla.interdonato ▴ 160
2
votes
1
reply
703
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 21 months ago by 67k • written 21 months ago by • 0
0
votes
1
reply
1.1k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 21 months ago by 67k • written 21 months ago by ▴ 50
3
votes
3
replies
1.5k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 21 months ago by ★ 4.1k • written 21 months ago by ▴ 10
0
votes
1
reply
703
views
Bioconductor tool for curating annotations?
Annotation
updated 21 months ago by ▴ 760 • written 21 months ago by ▴ 180
3
votes
2
replies
2.7k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
21 months ago m-bihie ▴ 10
1
vote
9
replies
1.7k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 22 months ago by 67k • written 22 months ago by • 0
0
votes
3
replies
1.1k
views
A look inside annotation packages
Annotation
23 months ago Ed Siefker ▴ 230
3
votes
2
replies
7.2k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 23 months ago by ▴ 200 • written 6.9 years ago by • 0
2
votes
3
replies
2.2k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 22 months ago by • 0 • written 24 months ago by ▴ 10
0
votes
5
replies
2.6k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by ▴ 30
0
votes
0
replies
888
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
742
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
1
vote
3
replies
2.3k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.4 years ago by 67k • written 2.4 years ago by ▴ 60
0
votes
1
reply
1.1k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.6 years ago kayla.interdonato ▴ 160
0
votes
0
replies
765
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.6 years ago Ava • 0
0
votes
1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.6 years ago by ▴ 70 • written 2.7 years ago by ▴ 670
0
votes
0
replies
876
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.8 years ago Amandeep • 0
0
votes
1
reply
1.4k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.8 years ago by ▴ 870 • written 3.0 years ago by • 0
0
votes
1
reply
1.6k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 2.8 years ago by 4.1k • written 2.8 years ago by ▴ 20
0
votes
0
replies
855
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
2.9 years ago Ahdee ▴ 50
0
votes
2
replies
2.5k
views
getBM error in the biomaRt R package
Annotation
updated 2.3 years ago by • 0 • written 3.0 years ago by • 0
0
votes
1
reply
1.2k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.0 years ago by • 0
0
votes
0
replies
1.0k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.0 years ago Shane • 0
0
votes
1
reply
1.1k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.0 years ago by 67k • written 3.0 years ago by • 0
1
vote
1
reply
1.7k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3.1 years ago by ★ 4.0k • written 5.3 years ago by ▴ 20
0
votes
1
reply
847
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 3.2 years ago by 4.1k • written 3.2 years ago by • 0
3
votes
1
reply
2.6k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
1
reply
2.6k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 3.2 years ago by ▴ 290 • written 3.2 years ago by ▴ 10
1
vote
2
replies
3.2k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
5
votes
10
replies
2.5k
views
How to do annotation with Limma
annotation limma
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction by abadgerw • 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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