Showing : annotation • reset
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.1 years ago by • 0
0
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5
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2.4k
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Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
written 9.2 years ago by • 0
1
vote
2
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1.1k
views
Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 6 months ago by 68k • written 6 months ago by • 0
1
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1
reply
404
views
Merging annotation with differential expression output
annotation RNASeqData
updated 7 months ago by 68k • written 7 months ago by • 0
0
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2
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576
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Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
7 months ago GA ▴ 10
1
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2
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1.8k
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help documentation for keytypes in annotationdbi packages
annotation
updated 7 months ago by ▴ 10 • written 5.0 years ago by • 0
0
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0
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320
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
8 months ago Muhammad • 0
0
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1
reply
327
views
affymetrix
genomes Annotation
updated 9 months ago by 68k • written 9 months ago by • 0
5
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13
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2.3k
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Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
12 months ago KABILAN • 0
0
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1
reply
532
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how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 12 months ago by 68k • written 12 months ago by • 0
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0
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623
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
14 months ago Aleena_Ensembl ▴ 30
1
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2
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1.1k
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Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
16 months ago • updated 15 months ago ronin • 0
2
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2
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1.1k
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
17 months ago pcantalupo ▴ 10
1
vote
6
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1.6k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 18 months ago by ▴ 230 • written 18 months ago by • 0
2
votes
2
replies
1.4k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 19 months ago by ▴ 10
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0
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777
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
20 months ago nilanjanamani88 • 0
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5
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2.6k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.8 years ago by ★ 13k
5
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11
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5.2k
views
How to annotate gene names for genomic coordinates?
annotation
written 10.3 years ago by • 0
0
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1
reply
1.1k
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
1
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0
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1.5k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
2.1 years ago kayla.interdonato ▴ 160
3
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4
replies
1.3k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
2
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4
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1.8k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
2.4 years ago RuBBiT0 ▴ 10
0
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2
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1.6k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
4
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2.0k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.5 years ago • updated 2.4 years ago Michael Steinbaugh ▴ 90
0
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0
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1.0k
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AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.6 years ago ahiser • 0
0
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3
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1.3k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.6 years ago christian.dina • 0
0
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0
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1.3k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.6 years ago kayla.interdonato ▴ 160
2
votes
1
reply
986
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
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1
reply
1.5k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 50
3
votes
3
replies
2.1k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.7 years ago by ★ 4.1k • written 2.7 years ago by ▴ 10
0
votes
1
reply
921
views
Bioconductor tool for curating annotations?
Annotation
updated 2.7 years ago by ▴ 760 • written 2.7 years ago by ▴ 180
3
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2
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3.5k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.7 years ago m-bihie ▴ 10
1
vote
9
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2.3k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.7 years ago by 68k • written 2.8 years ago by • 0
0
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3
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1.5k
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A look inside annotation packages
Annotation
2.9 years ago Ed Siefker ▴ 230
3
votes
2
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8.7k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.9 years ago by ▴ 200 • written 7.9 years ago by • 0
2
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3
replies
3.0k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.7 years ago by • 0 • written 2.9 years ago by ▴ 10
0
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5
replies
3.4k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.0 years ago by ★ 4.1k • written 3.0 years ago by ▴ 30
0
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0
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1.3k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
3.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
931
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
1
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3
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3.2k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 60
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1
reply
1.5k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.5 years ago kayla.interdonato ▴ 160
0
votes
0
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1.0k
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.5 years ago Ava • 0
0
votes
1
reply
1.3k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.5 years ago by ▴ 70 • written 3.6 years ago by ▴ 670
0
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0
replies
1.1k
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.7 years ago Amandeep • 0
0
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1
reply
1.8k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.8 years ago by ▴ 890 • written 3.9 years ago by • 0
0
votes
1
reply
2.0k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.8 years ago by 4.2k • written 3.8 years ago by ▴ 20
0
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0
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1.0k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.9 years ago Ahdee ▴ 60
0
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2
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3.4k
views
getBM error in the biomaRt R package
Annotation
updated 3.2 years ago by • 0 • written 3.9 years ago by • 0
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.9 years ago by • 0
0
votes
0
replies
1.3k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.9 years ago Shane • 0
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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