Showing : annotation • reset
2
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4
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139
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Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 4 days ago by ▴ 10
0
votes
4
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9.1k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.3 years ago by • 0
0
votes
5
replies
2.5k
views
Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
written 9.4 years ago by • 0
1
vote
2
replies
1.2k
views
Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 9 months ago by 68k • written 9 months ago by • 0
1
vote
1
reply
464
views
Merging annotation with differential expression output
annotation RNASeqData
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
2
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671
views
Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
9 months ago GA ▴ 10
1
vote
2
replies
2.0k
views
help documentation for keytypes in annotationdbi packages
annotation
updated 10 months ago by ▴ 10 • written 5.2 years ago by • 0
0
votes
0
replies
427
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
10 months ago Muhammad • 0
0
votes
1
reply
478
views
affymetrix
genomes Annotation
updated 11 months ago by 68k • written 11 months ago by • 0
5
votes
13
replies
2.5k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
14 months ago KABILAN • 0
0
votes
1
reply
581
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 15 months ago by 68k • written 15 months ago by • 0
0
votes
0
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691
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
16 months ago Aleena_Ensembl ▴ 30
1
vote
2
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1.2k
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
18 months ago ronin • 0
2
votes
2
replies
1.3k
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
19 months ago pcantalupo ▴ 10
1
vote
6
replies
1.8k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 21 months ago by ▴ 230 • written 21 months ago by • 0
2
votes
2
replies
1.5k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 21 months ago by ▴ 10
0
votes
0
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846
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
23 months ago nilanjanamani88 • 0
0
votes
5
replies
2.8k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 12.0 years ago by ★ 13k
5
votes
11
replies
5.4k
views
How to annotate gene names for genomic coordinates?
annotation
written 10.5 years ago by • 0
0
votes
1
reply
1.1k
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
1
vote
0
replies
1.7k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
2.3 years ago kayla.interdonato ▴ 160
3
votes
4
replies
1.3k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
2
votes
4
replies
2.0k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
2.6 years ago RuBBiT0 ▴ 10
0
votes
2
replies
1.8k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
4
replies
2.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.7 years ago • updated 2.6 years ago Michael Steinbaugh ▴ 90
0
votes
0
replies
1.2k
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.8 years ago ahiser • 0
0
votes
3
replies
1.4k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.8 years ago christian.dina • 0
0
votes
0
replies
1.4k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.8 years ago kayla.interdonato ▴ 160
2
votes
1
reply
1.1k
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
votes
1
reply
1.6k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.9 years ago by 68k • written 2.9 years ago by ▴ 50
3
votes
3
replies
2.3k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.9 years ago by ★ 4.1k • written 2.9 years ago by ▴ 10
0
votes
1
reply
989
views
Bioconductor tool for curating annotations?
Annotation
updated 2.9 years ago by ▴ 760 • written 2.9 years ago by ▴ 180
3
votes
2
replies
3.6k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
3.0 years ago • updated 2.9 years ago m-bihie ▴ 10
1
vote
9
replies
2.4k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
3
replies
1.6k
views
A look inside annotation packages
Annotation
3.1 years ago Ed Siefker ▴ 230
3
votes
2
replies
9.1k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 3.1 years ago by ▴ 200 • written 8.1 years ago by • 0
2
votes
3
replies
3.1k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
5
replies
3.6k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by ▴ 30
0
votes
0
replies
1.4k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
3.3 years ago kayla.interdonato ▴ 160
0
votes
1
reply
974
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
1
vote
3
replies
3.3k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 60
0
votes
1
reply
1.5k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.7 years ago kayla.interdonato ▴ 160
0
votes
0
replies
1.1k
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.8 years ago Ava • 0
0
votes
1
reply
1.4k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.7 years ago by ▴ 70 • written 3.8 years ago by ▴ 670
0
votes
0
replies
1.2k
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.9 years ago Amandeep • 0
0
votes
1
reply
1.9k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 4.0 years ago by ▴ 890 • written 4.1 years ago by • 0
0
votes
1
reply
2.2k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 4.0 years ago by 4.2k • written 4.0 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
4.1 years ago Ahdee ▴ 60
0
votes
2
replies
3.5k
views
getBM error in the biomaRt R package
Annotation
updated 3.4 years ago by • 0 • written 4.1 years ago by • 0
0
votes
1
reply
1.6k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.1 years ago by • 0
1,979 results • Page 1 of 40
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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