Showing : annotation • reset
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help documentation for keytypes in annotationdbi packages
annotation
updated 24 days ago by ▴ 10 • written 4.4 years ago by • 0
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0
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102
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Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
5 weeks ago Muhammad • 0
0
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1
reply
169
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affymetrix
genomes Annotation
updated 8 weeks ago by 68k • written 8 weeks ago by • 0
5
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13
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1.9k
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Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
5 months ago KABILAN • 0
0
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1
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327
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how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 5 months ago by 68k • written 5 months ago by • 0
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0
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395
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
6 months ago Aleena ▴ 30
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2
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940
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Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
8 months ago ronin • 0
2
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2
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767
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Get gene symbols for a set of hg19 coordinates
annotation hg19
10 months ago pcantalupo ▴ 10
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6
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1.2k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 11 months ago by ▴ 230 • written 11 months ago by • 0
2
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2
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1.0k
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 12 months ago by ▴ 10
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0
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592
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
13 months ago nilanjanamani88 • 0
0
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5
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2.4k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.2 years ago by ★ 13k
5
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11
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4.9k
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How to annotate gene names for genomic coordinates?
annotation
written 9.8 years ago by • 0
0
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1
reply
884
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Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
1
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0
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1.1k
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
18 months ago kayla.interdonato ▴ 160
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1
reply
6.8k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 18 months ago by 68k • written 18 months ago by • 0
3
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4
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1.1k
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Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 20 months ago by 68k • written 20 months ago by • 0
2
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4
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1.6k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
22 months ago • updated 21 months ago RuBBiT0 ▴ 10
0
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2
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1.4k
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How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 22 months ago by 68k • written 22 months ago by • 0
0
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4
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1.7k
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BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
22 months ago Michael Steinbaugh ▴ 90
0
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875
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AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
24 months ago • updated 23 months ago ahiser • 0
0
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3
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1.1k
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Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
24 months ago christian.dina • 0
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0
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1.1k
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News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.0 years ago kayla.interdonato ▴ 160
2
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1
reply
814
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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1
reply
1.3k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 50
3
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3
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1.7k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by ▴ 10
0
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1
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788
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Bioconductor tool for curating annotations?
Annotation
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 180
3
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2
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3.1k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.2 years ago • updated 2.1 years ago m-bihie ▴ 10
1
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9
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1.9k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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3
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1.3k
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A look inside annotation packages
Annotation
2.3 years ago Ed Siefker ▴ 230
3
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2
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8.0k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.3 years ago by ▴ 200 • written 7.3 years ago by • 0
2
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3
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2.5k
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Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.2 years ago by • 0 • written 2.3 years ago by ▴ 10
0
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5
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3.0k
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Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by ▴ 30
0
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0
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1.1k
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.5 years ago kayla.interdonato ▴ 160
0
votes
1
reply
806
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
1
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3
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2.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 60
0
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1
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1.3k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.9 years ago kayla.interdonato ▴ 160
0
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0
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870
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low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.0 years ago Ava • 0
0
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1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.9 years ago by ▴ 70 • written 3.0 years ago by ▴ 670
0
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0
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965
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.2 years ago Amandeep • 0
0
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1
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1.6k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.2 years ago by ▴ 890 • written 3.3 years ago by • 0
0
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1
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1.8k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.2 years ago by 4.1k • written 3.2 years ago by ▴ 20
0
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0
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934
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.3 years ago Ahdee ▴ 50
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2
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3.1k
views
getBM error in the biomaRt R package
Annotation
updated 2.6 years ago by • 0 • written 3.3 years ago by • 0
0
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1
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1.3k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.3 years ago by • 0
0
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0
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1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.4 years ago Shane • 0
0
votes
1
reply
1.2k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
1
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1
reply
1.9k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3.5 years ago by ★ 4.0k • written 5.7 years ago by ▴ 20
0
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1
reply
913
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 3.5 years ago by 4.1k • written 3.5 years ago by • 0
3
votes
1
reply
2.9k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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