Showing : annotation • reset
0
votes
6
replies
312
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 16 days ago by ▴ 170 • written 24 days ago by • 0
2
votes
1
reply
194
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 4 weeks ago by ★ 3.9k • written 5 weeks ago by ▴ 10
0
votes
0
replies
153
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
11 weeks ago nilanjanamani88 • 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.3 years ago by ★ 13k
5
votes
11
replies
4.2k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.8 years ago by • 0
0
votes
1
reply
443
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
1
vote
0
replies
374
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
0
votes
1
reply
3.4k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
3
votes
4
replies
659
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 9 months ago by 65k • written 9 months ago by • 0
2
votes
4
replies
917
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago • updated 10 months ago RuBBiT0 ▴ 10
0
votes
2
replies
699
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 11 months ago by 65k • written 11 months ago by • 0
0
votes
4
replies
1.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
11 months ago Michael Steinbaugh ▴ 90
0
votes
0
replies
509
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
13 months ago • updated 12 months ago ahiser • 0
0
votes
3
replies
712
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
13 months ago christian.dina • 0
0
votes
0
replies
640
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
13 months ago kayla.interdonato ▴ 160
2
votes
1
reply
526
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 14 months ago by 65k • written 14 months ago by • 0
0
votes
1
reply
809
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 14 months ago by 65k • written 14 months ago by ▴ 50
3
votes
3
replies
1.1k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 14 months ago by ★ 3.9k • written 14 months ago by ▴ 10
0
votes
1
reply
531
views
Bioconductor tool for curating annotations?
Annotation
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 180
3
votes
2
replies
2.1k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
15 months ago m-bihie ▴ 10
1
vote
9
replies
1.3k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 15 months ago by 65k • written 15 months ago by • 0
0
votes
3
replies
883
views
A look inside annotation packages
Annotation
16 months ago Ed Siefker ▴ 230
1
vote
2
replies
6.2k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 16 months ago by ▴ 20 • written 6.4 years ago by • 0
2
votes
3
replies
1.7k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 15 months ago by • 0 • written 17 months ago by ▴ 10
0
votes
5
replies
2.0k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 18 months ago by ★ 3.9k • written 18 months ago by ▴ 30
0
votes
0
replies
627
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
19 months ago kayla.interdonato ▴ 160
0
votes
1
reply
595
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
3
replies
1.6k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 22 months ago by 65k • written 22 months ago by ▴ 60
0
votes
1
reply
795
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.0 years ago kayla.interdonato ▴ 160
0
votes
0
replies
608
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.1 years ago Ava • 0
0
votes
1
reply
789
views
peak annotation
ChIPpeakAnno Annotation
updated 2.0 years ago by ▴ 70 • written 2.1 years ago by ▴ 670
0
votes
0
replies
674
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.2 years ago Amandeep • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.4 years ago by • 0
0
votes
1
reply
1.3k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 2.3 years ago by 3.8k • written 2.3 years ago by ▴ 20
0
votes
0
replies
701
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
2.4 years ago Ahdee ▴ 50
0
votes
2
replies
1.8k
views
getBM error in the biomaRt R package
Annotation
updated 20 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
955
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.4 years ago by • 0
0
votes
0
replies
780
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
2.4 years ago Shane • 0
0
votes
1
reply
830
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
1
vote
1
reply
1.5k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 2.6 years ago by ★ 3.9k • written 4.7 years ago by ▴ 20
0
votes
1
reply
700
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 2.6 years ago by 3.8k • written 2.6 years ago by • 0
3
votes
1
reply
2.1k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
1
vote
1
reply
2.0k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 2.6 years ago by ▴ 260 • written 2.7 years ago by ▴ 10
1
vote
2
replies
2.6k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 2.8 years ago by 65k • written 2.8 years ago by • 0
5
votes
10
replies
2.0k
views
How to do annotation with Limma
annotation limma
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
1
vote
2
replies
1.5k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
2.9 years ago carine.genet • 0
3
votes
9
replies
5.1k
views
LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
updated 2.2 years ago by • 0 • written 3.0 years ago by • 0
1
vote
0
replies
820
views
News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
3.0 years ago kayla.interdonato ▴ 160
8
votes
2
replies
1.6k
views
how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq Rattus_norvegicus_Data annotation
updated 3.0 years ago by ★ 4.0k • written 3.0 years ago by ▴ 10
0
votes
9
replies
1.8k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO biomartr annotation ensemble fungi
updated 3.0 years ago by 65k • written 3.0 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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