Showing : ensembldb • reset
10
votes
18
replies
4.6k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 4.2 years ago by 16k • written 4.2 years ago by 43k
0
votes
3
replies
1.9k
views
Problem select / ensembl package
ensembldb
4.2 years ago yinnahm • 0
2
votes
3
replies
2.6k
views
biomart query in R is not matching ensembl website - missing results
ensembldb biomaRt
updated 4.3 years ago by ★ 6.6k • written 4.3 years ago by • 0
0
votes
3
replies
1.8k
views
Error using old ensembldb annotations with R 4.0 +
anno EnsDb.Hsapiens.v79 ensDb.HSapiens.v92 AnnotationDbi ensembldb
4.4 years ago rbenel ▴ 50
1
vote
9
replies
3.2k
views
How to filter EnsDb into another EnsDb object instead of GRange?
ens ensembldb EnsDb.Hsapiens.v86 EnsDb.Rnorvegicus.v75
4.6 years ago Ahdee ▴ 60
1
vote
0
replies
1.5k
views
News: Ensembl 104 has just been released!
ensembldb biomaRt
4.7 years ago mchakiachvili ▴ 20
2
votes
1
reply
3.1k
views
Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 4.8 years ago by ★ 2.1k • written 4.8 years ago by ▴ 510
1
vote
2
replies
1.7k
views
Unable to use ensembldb's "ensDbFromGff()" function on .gff file from NCBI
ensembldb RNASeq
4.8 years ago Torkel • 0
0
votes
2
replies
2.0k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
4.9 years ago • updated 4.7 years ago mchakiachvili ▴ 20
3
votes
2
replies
4.5k
views
Mapping Ensemble IDs with version numbers using ensembl annotation packages
AnnotationDbi ensembldb
4.9 years ago Ezgi ▴ 60
2
votes
2
replies
5.3k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 5.0 years ago by ★ 2.1k • written 5.0 years ago by • 0
1
vote
1
reply
1.9k
views
topGO question
Ensembl ensembldb
updated 5.1 years ago by 68k • written 5.1 years ago by • 0
0
votes
0
replies
1.2k
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
5.1 years ago mchakiachvili ▴ 20
0
votes
4
replies
2.1k
views
Gene information (GRanges + sequence) to GenBank
granges genomic ranges genbankr ensembldb
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 20
4
votes
2
replies
2.4k
views
News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
5.4 years ago Johannes Rainer ★ 2.1k
0
votes
1
reply
2.6k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
1
vote
1
reply
1.1k
views
Is transcript color accessible through ensembldb? (gold = in both HAVANA+ENSEMBL)
ensembldb
updated 5.5 years ago by ★ 2.1k • written 5.6 years ago by ▴ 160
1
vote
0
replies
1.7k
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
5.7 years ago Johannes Rainer ★ 2.1k
2
votes
1
reply
1.5k
views
protein_domain_source from ensembldb and mapping with PFAM.db
ensembldb pfam.db
5.7 years ago bruce.moran ▴ 30
0
votes
1
reply
2.3k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
5.8 years ago Assa Yeroslaviz ★ 1.5k
2
votes
12
replies
2.5k
views
BioFileCache Problem and not linking to ensembldb problem in TxiMeta
Tximeta BioFileCache Ensembldb
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 30
3
votes
0
replies
2.0k
views
News: EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation ensembldb EnsDb AnnotationHub News
6.1 years ago Johannes Rainer ★ 2.1k
5
votes
6
replies
5.1k
views
How to build and map to a "pre-mRNA" reference transcriptome for single nucleus RNA-seq data?
tximeta ensembldb single-cell snRNA-seq tximport
updated 6.3 years ago by ★ 3.4k • written 6.3 years ago by ▴ 80
1
vote
0
replies
1.3k
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
6.5 years ago Johannes Rainer ★ 2.1k
4
votes
4
replies
4.4k
views
Retrieve canonical transcript for each gene via ensembldb R package
annotation ensembldb
updated 3.5 years ago by ▴ 40 • written 7.0 years ago by • 0
7
votes
8
replies
5.3k
views
R failing to load genome files from EnsDb.Hsapiens.v86
tximport ensembldb EnsDB.hsapiens.v86
updated 7.0 years ago by 0 • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Pick coding vs non-coding from Ensembl data set
R ensembl ensembldb noncoding rna protein coding
updated 7.1 years ago by ★ 2.1k • written 7.1 years ago by • 0
0
votes
5
replies
3.7k
views
mitochodria isCircular equals to FALSE in EnsDb.Hsapiens.v86 and EnsDb.Mmusculus.v79
R annotation ensembldb
7.2 years ago foehn ▴ 100
1
vote
2
replies
3.0k
views
tximport using Ensembdb to create Tx2gene dataframe with bovine transcripts ?
tximport ensembldb bos taurus tx2gene
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
votes
3
replies
5.3k
views
Create Ensembl transcript to gene IDs table with R ensembldb package for tximport
ensembldb tximport salmon
updated 7.7 years ago by ★ 2.1k • written 7.7 years ago by ▴ 30
6
votes
14
replies
4.1k
views
ensembldb error/bug: Can't locate Bio/EnsEMBL/ApiVersion.pm in @INC | fetchTablesFromEnsembl
ensembldb
updated 7.8 years ago by ★ 2.1k • written 7.8 years ago by ▴ 100
0
votes
3
replies
3.0k
views
incorrect biomaRt output order of gene list
biomart ensembldb error
7.9 years ago Yuqia • 0
3
votes
4
replies
17k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
7.9 years ago Yuqia • 0
6
votes
11
replies
4.5k
views
ensembldb from M.musculus NCBI37 v67 gtf
ensembldb NCBI37 v67 ensembl
8.0 years ago • updated 7.9 years ago floriandeckert ▴ 30
5
votes
9
replies
4.3k
views
Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb ensembl release rnaseq salmon tximport
8.0 years ago emmak ▴ 20
1
vote
3
replies
1.9k
views
how to get intron with ensembldb. package?
granges ensembldb GenomicFeatures
8.0 years ago alessandro.pastore ▴ 20
2
votes
2
replies
2.0k
views
ensembldb and pseudogenes mapping to the same Ensembl ID
ensembldb
8.0 years ago meeta.mistry ▴ 30
0
votes
5
replies
2.5k
views
error when using ensembldb with a MySQL server
ensembldb rmysql
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 10
1
vote
0
replies
1.7k
views
News: Ensembl 91 EnsDb databases added to AnnotationHub
annotation ensembldb ensembl News
8.1 years ago Johannes Rainer ★ 2.1k
1
vote
2
replies
3.1k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
8.1 years ago inzirio ▴ 10
1
vote
2
replies
1.7k
views
get_gene_transcript_exon_tables.pl extremely slow
ensembl ensembldb
updated 8.2 years ago by ★ 2.1k • written 8.2 years ago by ▴ 230
3
votes
2
replies
2.1k
views
tximport with versioned identifiers
tximport ensembldb
8.2 years ago Ed Siefker ▴ 230
3
votes
7
replies
4.3k
views
ensDbFromGtf error from gtf file downloaded from GENCODE.
ensembldb ensdbfromgtf
updated 8.4 years ago by ★ 2.1k • written 8.4 years ago by ▴ 40
3
votes
8
replies
6.5k
views
EnsemblDb: how to retrieve gene name / description?
EnsDb.Mmusculus.v79 ensembldb annotation
updated 8.4 years ago by ★ 2.1k • written 8.4 years ago by ★ 4.1k
0
votes
3
replies
2.3k
views
errors with makeTxDbFromBiomart
biomart genomicfeatures maketxdbfrombiomart ensembldb ensDbFromGtf
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by • 0
5
votes
3
replies
2.3k
views
Is it possible to get Ensembl gene descriptions with ensembldb?
ensembldb
updated 8.6 years ago by ★ 2.1k • written 8.6 years ago by ▴ 90
2
votes
9
replies
3.3k
views
ensembldb salmon deseq2 txt2import right tool?
ensembldb deseq2
8.6 years ago aaron.dickey • 0
5
votes
6
replies
4.0k
views
Is mapId supposed to concatenate multiVals?
annotationdbi ensembldb
updated 8.7 years ago by ★ 2.1k • written 8.7 years ago by ★ 13k
4
votes
9
replies
3.0k
views
keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
ensdb.hsapiens.v75 ensembldb keys
updated 8.7 years ago by ★ 2.1k • written 8.7 years ago by ▴ 680
0
votes
2
replies
2.5k
views
Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 9.6 years ago by ★ 2.1k • written 9.6 years ago by ▴ 20
103 results • Page 2 of 3
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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