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install
•
reset
0
votes
6
replies
1.7k
views
Illumina Methylation Manifest Install
Install
biocinstaller
package installation
6.0 years ago
julieumn
• 0
0
votes
7
replies
1.6k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install
instal
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
client.kashi
• 0
1
vote
4
replies
6.1k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install
impute
updated 12 months ago by
yuzhijian
• 0 • written 2.2 years ago by
Aaron
• 0
3
votes
2
replies
5.6k
views
problem installing "vsn" on debian... gcc: error: unrecognized command line option -fstack-protector-strong
install
vsn
gcc
debian
9.2 years ago
regcl
• 0
1
vote
5
replies
3.6k
views
Can't Download DESeq2 Package (Ubuntu 20.04; R 4.0.1; BioConductor 3.11)
deseq2
install
r4.0
bioconductor3.11
ubuntu20.04
3.9 years ago
ruwaa.ibrahem
• 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R
BiocManager
install
clusterProfiler
GO
written 17 months ago by
abhisek001
• 0
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 2.0 years ago by
shepherl
3.8k • written 2.0 years ago by
laiajulianamu
• 0
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite
install
8.4 years ago
louiseapps2
• 0
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter
Install
2.2 years ago
czan
▴ 10
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install
3.13
affyQCReport
updated 2.5 years ago by
Miguel
▴ 10 • written 2.5 years ago by
lsmatott
• 0
2
votes
2
replies
1.4k
views
BiomaRT URLs down? 404 Not Found
biomart
bioconductor
support.bioconductor.org
biocinstaller
install
6.3 years ago
n.pantelireis16
• 0
5
votes
4
replies
2.7k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
2.5 years ago • updated 2.4 years ago
RobKo
▴ 10
5
votes
18
replies
7.5k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.3 years ago by
Victor
• 0
8
votes
7
replies
1.8k
views
RMySQL availiability with Bioconductor 3.0
Install
RMySQL
Windows
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Panagiotis Moulos
▴ 30
1
vote
3
replies
6.5k
views
problem in installing Bio conductor package
bioconductorpackages
Install
updated 9 weeks ago by
Guru
• 0 • written 3.5 years ago by
k200987
• 0
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 3.4 years ago by
Martin Morgan
25k • written 3.4 years ago by
Khai-Chuong
• 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager
Install
updated 3.3 years ago by
James W. MacDonald
65k • written 3.3 years ago by
saadmurtazakhan
▴ 10
0
votes
1
reply
892
views
error during installation of 'DEseq2' package
DESeq2
Install
updated 3.2 years ago by
Hervé Pagès
16k • written 3.2 years ago by
su
• 0
2
votes
1
reply
833
views
Problem with pd.hta.2.0 package installation
Install
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
croft.carys
• 0
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error
DESeq2
Install
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Mick
• 0
1
vote
20
replies
3.6k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2
Install
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Hannah000111
• 0
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install
VariantAnnotation
Bioconductor
chromVAR
updated 2.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.7 years ago by
Hannah
• 0
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install
Bioconductor
DESeq2
2.5 years ago
ladypurrsia
▴ 10
0
votes
4
replies
330
views
DNABarcodes-Installation Issue
DNABarcodes
Install
3 months ago
nk130
• 0
1
vote
2
replies
2.0k
views
Installation of "xps" on windows 7 : error message
xps
windows 7
Install
updated 9.6 years ago by
cstrato
★ 3.9k • written 9.6 years ago by
Alexandre Henriques
• 0
0
votes
1
reply
2.1k
views
Compilation problem installing IRanges
Iranges
install
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
tuto345
• 0
0
votes
5
replies
2.0k
views
Flowclust install probelms on Ubuntu
flowclust
ubuntu
install
error
8.9 years ago
gareth.howell
• 0
1
vote
1
reply
5.0k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install
installation
biocinstaller
8.8 years ago
tresch
• 0
1
vote
1
reply
2.7k
views
installing GO.db on windows 64x
go
install
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
nikka1691
• 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite
gcc
install
fedora
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Knut Hansen
▴ 20
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
jol.espinoz
▴ 40
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
matt.s.leslie
• 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
cristian
▴ 10
0
votes
2
replies
977
views
Error when installing pcaExplorer
install
GenomeInfoDbData
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
lina.bird
• 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2
install
software error
3.8 years ago
mja18
▴ 40
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error
install
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
lirongrossmann
▴ 40
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install
CAMERA
insta
PackageType
updated 3.5 years ago by
Andrzej Oleś
▴ 750 • written 3.5 years ago by
Christopher
• 0
0
votes
1
reply
1.0k
views
install GenomicFeatures fail
GenomicFeatures
install
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
soda
▴ 80
4
votes
2
replies
4.1k
views
Install package without updating dependent package
Install
AnnotationForge
2.4 years ago
亮
• 0
1
vote
1
reply
959
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 3.0 years ago by
shepherl
3.8k • written 3.1 years ago by
ch_el
▴ 10
1
vote
3
replies
1.0k
views
I can't upgrade to version 3.15 in R
Install
updated 19 months ago by
Gordon Smyth
50k • written 19 months ago by
dsrlij
• 0
1
vote
3
replies
1.2k
views
Bioconductor installation error
Install
updated 2.0 years ago by
Helena
• 0 • written 2.0 years ago by
Cody
▴ 10
0
votes
3
replies
1.8k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install
gpart
renv
updated 2.2 years ago by
Bert
• 0 • written 2.3 years ago by
matt.shenton
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Michel
• 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.1k • written 17 months ago by
laujihen
• 0
0
votes
2
replies
754
views
error in install immunedeconv
Install
updated 28 days ago by
Arash
• 0 • written 13 months ago by
fenglingao
• 0
0
votes
2
replies
1.6k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2
Install
r
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
Catherine
• 0
1
vote
2
replies
842
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
14 months ago
abhisek001
• 0
2
votes
1
reply
3.8k
views
Bioconductor Package Installation
install
TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago
Theresa
▴ 20
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 24 months ago by
shepherl
3.8k • written 24 months ago by
eruan1
• 0
50 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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