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20
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13
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3.4k
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News:
markdown is coming to the support site
markdown
News
6.8 years ago • updated 6.2 years ago
Lucas Schiffer
▴ 240
14
votes
8
replies
2.6k
views
News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
13
votes
1
reply
2.9k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
8.3 years ago
Martin Morgan
25k
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.5 years ago
shepherl
3.9k
11
votes
0
replies
2.2k
views
News:
Bioconductor 3.0 is released!
news
News
9.6 years ago • updated 9.5 years ago
Dan Tenenbaum
★ 8.2k
11
votes
1
reply
1.1k
views
News:
Rsubread now available for Windows
rsubread
News
4.7 years ago
Gordon Smyth
50k
10
votes
0
replies
2.7k
views
News:
Professor James Taylor
in memoriam
News
4.1 years ago
Martin Morgan
25k
10
votes
0
replies
1.7k
views
News:
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
news
conference
eurobioc2017
News
6.7 years ago • updated 6.5 years ago
Aaron Lun
★ 28k
10
votes
3
replies
3.1k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.7 years ago
Andrzej Oleś
▴ 750
10
votes
15
replies
2.8k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
7.1 years ago • updated 6.8 years ago
Martin Morgan
25k
9
votes
7
replies
3.0k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 7.8 years ago by
shepherl
3.9k • written 8.3 years ago by
Martin Morgan
25k
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.2 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
9
votes
1
reply
2.2k
views
News:
Ensembl release 80 is out!
biomart
Ensembl
zebrafish
Rat
1000 genomes phase 3
News
updated 9.0 years ago by
Sonali Arora
▴ 390 • written 9.0 years ago by
Thomas Maurel
▴ 800
8
votes
0
replies
1.6k
views
News:
Recent course materials now easily searchable
course-material
News
updated 9.6 years ago by
Wolfgang Huber
★ 13k • written 9.7 years ago by
Dan Tenenbaum
★ 8.2k
8
votes
2
replies
1.3k
views
News:
BioCAsia, 29-30th November 2018, Melbourne, Australia
news
conference
training
News
updated 5.4 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Steve Pederson
▴ 170
8
votes
1
reply
2.8k
views
News:
Bioconductor 3.5 is released
bioconductor
news
release
News
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Valerie Obenchain
★ 6.8k
8
votes
10
replies
2.1k
views
News:
Bioconductor 3.2 is released!
news
News
updated 8.6 years ago by
JunLVI
▴ 40 • written 8.6 years ago by
Dan Tenenbaum
★ 8.2k
7
votes
0
replies
2.0k
views
News:
Announcing Docker containers for Bioconductor
docker
News
9.3 years ago
Dan Tenenbaum
★ 8.2k
7
votes
5
replies
3.0k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.5 years ago by
Laurent Gatto
1.6k • written 8.7 years ago by
Mark Dunning
★ 1.1k
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.0 years ago by
Valerie Obenchain
★ 6.8k
7
votes
1
reply
1.4k
views
News:
Bioconductor Community Advisory Board Nominees
news
community
bioconductor oversight
News
updated 4.2 years ago by
Sean Davis
21k • written 4.2 years ago by
Matthew Ritchie
▴ 1000
6
votes
1
reply
1.2k
views
News:
BioC2019 June 24-27 in New York City
conference
News
5.5 years ago
Levi Waldron
★ 1.1k
6
votes
6
replies
3.3k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Dan Tenenbaum
★ 8.2k
6
votes
0
replies
1.1k
views
News:
New Package Submission Process
news
package
submit package
News
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Valerie Obenchain
★ 6.8k
6
votes
0
replies
1.9k
views
News:
Bioconductor 3.4 is released
news
announcement
release
News
7.5 years ago
Hervé Pagès
16k
6
votes
0
replies
856
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.5 years ago
shepherl
3.9k
6
votes
0
replies
2.6k
views
News:
F1000 research sponsored prize for contribution to Support forum
news
News
8.4 years ago
Mark Dunning
★ 1.1k
6
votes
0
replies
2.3k
views
News:
Bioconductor git server is now LIVE!
git
github
svn
git-svn bridge
git mirror
News
6.7 years ago
nitesh.turaga
▴ 140
6
votes
0
replies
1.0k
views
News:
Bioconductor Technical Advisory Board
bioconductor oversight
News
5.0 years ago
Martin Morgan
25k
6
votes
0
replies
1.3k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.1 years ago
Aaron Lun
★ 28k
6
votes
0
replies
2.1k
views
News:
BioC 2015 Annual Conference
BioC2015
News
9.0 years ago • updated 8.8 years ago
Martin Morgan
25k
6
votes
3
replies
2.3k
views
News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
News
5.8 years ago
Hervé Pagès
16k
5
votes
5
replies
2.0k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
5
votes
7
replies
1.5k
views
News:
Updated support site
news
News
9.6 years ago
Martin Morgan
25k
5
votes
0
replies
966
views
News:
Bioconductor 3.6 is released
bioconductor
news
release
News
6.5 years ago
Valerie Obenchain
★ 6.8k
5
votes
1
reply
3.4k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.1 years ago by
thomas.ingraham
▴ 10 • written 8.1 years ago by
Wolfgang Huber
★ 13k
5
votes
0
replies
1.1k
views
News:
October Newsletter now available
newsletter
News
9.6 years ago
Valerie Obenchain
★ 6.8k
5
votes
0
replies
960
views
News:
Bioconductor Newsletter: January 2016
news
newsletter
bioconductor
News
8.3 years ago
Valerie Obenchain
★ 6.8k
5
votes
5
replies
2.8k
views
News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
6.1 years ago
Sean Davis
21k
5
votes
0
replies
5.3k
views
News:
Bioconductor Package Archives
bioconductor
archive
news
News
6.5 years ago
Valerie Obenchain
★ 6.8k
5
votes
0
replies
2.1k
views
News:
edX online course introducing Bioconductor now up and running
annotation
bioconductor
News
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Vincent J. Carey, Jr.
6.7k
5
votes
1
reply
1.7k
views
News:
Bioc2015 conference ongoing now.
bioconductor
conference
News
8.8 years ago
Sean Davis
21k
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.8 years ago by
Sonali Arora
▴ 390 • written 8.8 years ago by
Thomas Maurel
▴ 800
5
votes
2
replies
1.4k
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Levi Waldron
★ 1.1k
5
votes
0
replies
1.1k
views
News:
Course announcement: Statistical Data Analysis for Genome Scale Biology (CSAMA) - Brixen, Italy 21-26 July 2019
csama
News
5.2 years ago • updated 5.1 years ago
Wolfgang Huber
★ 13k
5
votes
0
replies
699
views
News:
Cite Bioconductor packages using Zotero (browser extension)
Zotero
News
4.6 years ago
Qiang
▴ 80
4
votes
0
replies
1.6k
views
News:
Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
Course
News
9.6 years ago • updated 9.5 years ago
Wolfgang Huber
★ 13k
4
votes
1
reply
995
views
News:
About the recent flurry of spam posts
security
spam
News
8.0 years ago
Dan Tenenbaum
★ 8.2k
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.5 years ago by
Valerie Obenchain
★ 6.8k
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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