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package
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reset
13
votes
1
reply
2.9k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
8.4 years ago
Martin Morgan
25k
12
votes
3
replies
6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.2 years ago
lloyd.izard
▴ 80
9
votes
6
replies
1.8k
views
package specifically dedicated to a manuscript
package
guidelines
9.3 years ago
petyuk
▴ 70
6
votes
0
replies
1.1k
views
News:
New Package Submission Process
news
package
submit package
News
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
Valerie Obenchain
★ 6.8k
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.0 years ago
flying-sheep
▴ 10
4
votes
3
replies
2.8k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 8.2 years ago by
Paul Shannon
▴ 470 • written 8.2 years ago by
Henrik Bengtsson
★ 2.4k
4
votes
7
replies
2.0k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
Shian Su
▴ 40
3
votes
2
replies
941
views
Prevent "New version" message to appear
package
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
nick
▴ 10
3
votes
3
replies
1.4k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
DcL-A
• 0
3
votes
3
replies
951
views
Package fail to build
package
OpenStats
updated 2.1 years ago by
Hervé Pagès
16k • written 2.1 years ago by
hamedhm
• 0
3
votes
2
replies
2.2k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
15 months ago
m-bihie
▴ 10
2
votes
1
reply
955
views
Curated Data Package in Bioconductor
package
data
5.7 years ago
divyswar01
• 0
2
votes
5
replies
1.5k
views
Submitting R packages with external data
package
updated 9.3 years ago by
Andrzej Oleś
▴ 750 • written 9.3 years ago by
vittorio.fortino
• 0
2
votes
2
replies
6.1k
views
package install issue (ubuntu 14.04, R 3.2.1)
package
installation
8.8 years ago
doublehelixlf
▴ 10
2
votes
3
replies
2.8k
views
package for sex determination using sam/bam files
software
sex
package
8.6 years ago
Pau Marc Muñoz Torres
▴ 20
2
votes
8
replies
3.7k
views
Which R version is needed for tximport package?
tximport
package
R version
install tximport
3.7 years ago
harelarik
▴ 60
2
votes
4
replies
1.2k
views
Bioconductor package development
package
R
software
development
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
Dany
• 0
2
votes
7
replies
4.8k
views
Installing Local packages in Bioconductor
package
updated 9 months ago by
Boxun
• 0 • written 2.0 years ago by
BioC123
• 0
2
votes
3
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.8 years ago
shepherl
3.9k
1
vote
4
replies
768
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 11 months ago by
Hervé Pagès
16k • written 12 months ago by
Manish
• 0
1
vote
2
replies
1.1k
views
R packages old versions
R
deseq2
package
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
minie
• 0
1
vote
6
replies
2.2k
views
Detect short tandem repetitions from bam file
bam
short tandem repetitions
package
8.6 years ago
Pau Marc Muñoz Torres
▴ 20
1
vote
5
replies
2.1k
views
Tissue Specificity R-package
tissue
specificity
r
package
package development
updated 6.2 years ago by
jaro.slamecka
▴ 140 • written 6.2 years ago by
BioinfGuru
▴ 30
1
vote
4
replies
4.6k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
nereidaramirez
• 0
1
vote
7
replies
1.9k
views
Ballgown object construction error
ballgown
scan
error
package
7.0 years ago • updated 6.9 years ago
spaque57
• 0
1
vote
3
replies
988
views
new submission : waiting duration
package
9.4 years ago
kmezhoud
▴ 10
1
vote
2
replies
1.0k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 6.0 years ago by
emmascottgm
• 0 • written 6.0 years ago by
rcavalca
▴ 140
1
vote
2
replies
1.1k
views
New package version submission
package
submit package
package updates
7.9 years ago
francescodc87
• 0
1
vote
6
replies
2.9k
views
how to create a NEWS file in R package
news
package
updated 5.8 years ago by
ahlammajid352
• 0 • written 5.8 years ago by
xyluo1991
• 0
1
vote
0
replies
962
views
News:
Shields/Badges on Package landing pages
package
badges
shields
News
6.6 years ago
shepherl
3.9k
1
vote
1
reply
1.2k
views
Large example data with Bioconductor package
package
updated 6.6 years ago by
shepherl
3.9k • written 6.6 years ago by
Marek Gierlinski
▴ 30
1
vote
3
replies
1.3k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.9k
1
vote
2
replies
891
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
pertille
• 0
1
vote
3
replies
1.9k
views
question about the EdgeR package: additive models and blocking
package
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
Fix Ace
▴ 100
1
vote
1
reply
975
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 3.1 years ago by
shepherl
3.9k • written 3.1 years ago by
ch_el
▴ 10
1
vote
2
replies
1.2k
views
How to build a non "gene-centered" annotation package using SQLForge ?
annotation
package
custom
microarray
9.3 years ago
becker.jeremie
• 0
1
vote
1
reply
9.1k
views
Problems to install a package - Ubuntu
ubuntu
package
installation
varianttools
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
lelemraposo
• 0
0
votes
3
replies
2.9k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
22 months ago
elmfinds
• 0
0
votes
3
replies
2.0k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
kanacska
▴ 10
0
votes
2
replies
3.9k
views
package ‘ComplexHeatmap’ is not available
software error
package
updated 9.1 years ago by
Guangchuang Yu
★ 1.2k • written 9.1 years ago by
duygu.ozcelik
• 0
0
votes
1
reply
2.0k
views
Graph viewer for Reactome Pathways
bioconductor
package
reactome
graph
updated 8.9 years ago by
Johannes Rainer
★ 2.0k • written 8.9 years ago by
Deepak Tanwar
▴ 10
0
votes
2
replies
854
views
Update a package in a older relase
package
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
gobbi.andrea
• 0
0
votes
0
replies
1000
views
CNTools package lead R to abort
CNTools
package
8.9 years ago
sircoulombf
• 0
0
votes
4
replies
3.6k
views
Biostrings throwing error
biostrings
installation
package
keepNA
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
prim-and-proper
• 0
0
votes
3
replies
2.5k
views
DLL maps not found while compiling package in Windows machine
package
compilation error
dll
windows
8.6 years ago
Miguel Juliá
• 0
0
votes
2
replies
1.2k
views
R package for molecule interactions?
r
package
function
interactions
8.5 years ago
amyfm
▴ 10
0
votes
1
reply
788
views
I want to submit a package to Bioconductor by Github. But it always comes out an inexplicable problems
package
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
taosheng.x
• 0
0
votes
1
reply
1.4k
views
ChAMP package library loading error
methylation
package
7.9 years ago
sdeshpande
• 0
0
votes
1
reply
1.3k
views
How to submit a package hosted on Bitbucket
package
submission
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
richierocks
▴ 40
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package
s4vectors
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
my4
▴ 10
50 results • Page
1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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