Showing : rnaseq • reset
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Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel switzerland RNAseq metabolomics Job
7.6 years ago Robert Ivanek ▴ 750
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4
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5.9k
views
Change point size and remove outline in scater's plotPCA
scater rnaseq single-cell
updated 7.6 years ago by • 0 • written 8.5 years ago by ▴ 70
3
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2
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2.0k
views
Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
edgeR rnaseq repeated measures
updated 7.6 years ago by ★ 7.9k • written 7.6 years ago by • 0
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1
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2.0k
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Error while Installing DESeq2
software error R deseq2 rnaseq
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
2
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18
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4.3k
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Using tximport on rsem files produces error while trying to read in files
R tximport rnaseq tpm rsem
7.6 years ago stephan.emmrich ▴ 10
0
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1
reply
693
views
Time-series Experiments with Varied Drug Concentrations Design Matri
deseq2 rnaseq
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
1
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1
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1.4k
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DESeq2 confounding cartridge
deseq2 confounders nanostring rnaseq differential gene expression
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
0
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2
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3.9k
views
Going crazy with normalizing TCGA raw rsem gene count
cancer tcga normalization rnaseq differential gene expression
updated 7.6 years ago by • 0 • written 10.6 years ago by • 0
1
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1
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1.3k
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How to compare RNA-seq counts matrices from different aligners ?
rnaseq counts alignement
7.6 years ago Aurora ▴ 20
7
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8
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15k
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DESeq2: one condition vs multiple combined
rnaseq deseq2
updated 7.7 years ago by ▴ 10 • written 9.2 years ago by ▴ 40
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0
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2.8k
views
topGO (Version: 2.30.1) - weight01 algorithm
topgo gene ontology pathway analysis rnaseq DEG
7.7 years ago digrigor ▴ 10
0
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28
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4.6k
views
Job: Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq data integration single-cell pacbio across species Job
7.7 years ago bgee • 0
0
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1
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1.3k
views
GenomicFeatures: could not find symbol "recursive" in environment of the generic function
genomicfeatures rnaseq txdb
7.7 years ago lucasmacielbiotec • 0
1
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4
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3.2k
views
If transcript-to-gene conversion is needed in kallisto > tximport > DESeq2 pipeline
deseq2 rnaseq kallisto tximport
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
7
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10
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7.6k
views
Justification for collapsing technical replicates in DESeq2
deseq2 rnaseq replicate differential expression
updated 7.7 years ago by ▴ 30 • written 9.3 years ago by ▴ 50
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5
replies
1.4k
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DESeq2: normalization of experiments sequenced separately
RNAseq normalization deseq2
7.7 years ago uguy • 0
0
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0
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1.4k
views
Job: Biostatistician III @ Duke University
rnaseq precision medicine biomarker genomics Job
7.7 years ago ram330 • 0
1
vote
1
reply
872
views
edgeR: Subset DGEList by treatment-specific expression
rnaseq edger
updated 7.7 years ago by ★ 29k • written 7.7 years ago by • 0
7
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11
replies
3.4k
views
Analysis of pathways using edgeR
rnaseq differential expression edgeR kegg
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 60
2
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2
replies
1.8k
views
ASpli ERROR during the counting step
ASpli rnaseq
updated 7.7 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
1
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2
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3.3k
views
use tximport's countsFromAbundance when using DESeq2
deseq2 tximport normalization salmon rnaseq
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
1
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3
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1.4k
views
plotMA (DESeq2) Issue
deseq2 plotMA rnaseq logfoldchange
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
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0
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621
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summarizeOverlaps to count stranded single-end RNA-seq dara
rnaseq
7.7 years ago yinyuan • 0
1
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4
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2.0k
views
problem of getting count matrix in featurecounts of Rsubread package
rnaseq rsubread featurecounts
updated 7.7 years ago by ★ 3.6k • written 7.7 years ago by • 0
2
votes
2
replies
1.5k
views
tximport failing at importing TPM instead of FPKM
tximport rnaseq rsem
updated 7.7 years ago by • 0 • written 7.7 years ago by • 0
5
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4
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2.1k
views
Glimma Interactive plots for RNAseq
Glimma R markdown rnaseq
7.7 years ago Aurora ▴ 20
2
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2
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991
views
Normalize for changes in one direction
limma voom rnaseq
updated 7.7 years ago by ★ 29k • written 7.7 years ago by ▴ 90
2
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1
reply
1.1k
views
DESeq2-No replicates-Utility of log2fold shrunk values?
deseq2 rnaseq
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
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8
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6.6k
views
Comparing between two differential expression analysis - two different fold changes
Deseq deseq2 differential gene expression rnaseq statistical test
7.8 years ago Marina ▴ 40
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2
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4.5k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
0
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4
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1.8k
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Normalise counts when tumour samples have normal tissue contamination.
deseq2 deseq edgeR rnaseq htseqcounts
7.8 years ago Deepali • 0
0
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0
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1.7k
views
Job: Senior Bioinformatician, Children's Cancer Research Institute Vienna, Austria
postdoc rnaseq NGS WGS bioinformatician job Job
7.8 years ago da.de ▴ 30
0
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1
reply
1.9k
views
MA plot interpretation .
MAPLOT DESEQ2 RNASEQ
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
5
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9
replies
4.3k
views
Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb ensembl release rnaseq salmon tximport
7.8 years ago emmak ▴ 20
3
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4
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2.7k
views
edgeR - comparing treatment groups across multiple populations
rnaseq edger
updated 7.8 years ago by ★ 29k • written 7.8 years ago by • 0
1
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3
replies
1.0k
views
rna-seq analysis with limma shows only 1 differential expressed gene
limma rnaseq
updated 7.8 years ago by • 0 • written 7.8 years ago by • 0
4
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7
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3.7k
views
DESeq2 vs TCGAbiolinks normalization methods
normalization rnaseq deseq2
updated 4.0 years ago by • 0 • written 7.8 years ago by ▴ 420
1
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1
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2.4k
views
How can I retrieve the gene names of my count matrix?
rnaseq summarizeoverlaps count matrix
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
3
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4
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3.4k
views
DESeq2 batch effect modeling and matrix not full rank
deseq2 rnaseq rna-seq
updated 7.8 years ago by 43k • written 7.8 years ago by ▴ 20
2
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2
replies
1.1k
views
Moderated F-statistics for time course experiment
limma rnaseq
updated 7.8 years ago by 53k • written 7.8 years ago by ▴ 130
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0
replies
1.1k
views
Subset functionin R
R ballgown rnaseq
7.8 years ago amy16 • 0
0
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4
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1.3k
views
can DESeq2 be used to compare these miRNA read counts from 9 samples?
deseq2 rnaseq
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
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0
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1.1k
views
Accessing the assembly data-output
R rnaseq ballgown
7.8 years ago amy16 • 0
1
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1
reply
1.4k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
7.8 years ago WouterDeCoster ▴ 130
1
vote
1
reply
2.6k
views
WGCNA - Choosing the best threshold
wgcna sft picksoftthreshold threshold rnaseq
updated 7.8 years ago by ★ 3.0k • written 7.8 years ago by ▴ 40
4
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5
replies
3.1k
views
MasigPro and estimation of theta for negative binomial law
R masigpro edgr rnaseq negative binomial model
7.8 years ago nicolas.hipp ▴ 20
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3
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1.5k
views
upperquartile with voom
limma-voom rnaseq normalization
7.8 years ago bilcodygm • 0
0
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2
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1.6k
views
assess quality of data
rnaseq edger limma-voom
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
2
votes
2
replies
2.3k
views
RNAseq analysis: how to compare two very different samples?
edgeR deseq2 RNAseq
updated 7.8 years ago by ★ 29k • written 7.8 years ago by ▴ 10
1
vote
3
replies
865
views
Is it reasonable to use rlog difference to reflect differential expression of a gene across samples, and rlog value to reflect the expression level
deseq2 rnaseq
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
1,409 results • Page 14 of 29
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Comment: Guidance Requested on GCN Network Analysis and Module Enrichment in R by insuraasancetaxrealty • 0
Ensure your SummarizedExperiment object correctly incorporates the RPKM expression matrix, GTF gene annotation [link][1] , and sample metad…
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If you re experiencing unexpected results while running your fitGAM function, it s important to check that your dataset s dimnames are cons…
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Comment: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by tomaamylikefood • 0
Using biomaRt to extract SNP information from genomic regions is as simple as setting the correct dataset in this case, and defining your …
Comment: Save the Date for EuroBioC2026 in Turku! by tomaamylikefood • 0
If you re interested in staying productive and entertained while following updates from events like EuroBioC2026, you can Download free And…
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Issues with downloading biomaRt - SeqInfo and S4 Vectors
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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