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Showing :
s4vectors
•
reset
3
votes
2
replies
1.1k
views
Store Matrix in DataFrame Cell
S4Vectors
8 months ago
Dario Strbenac
★ 1.6k
1
vote
4
replies
986
views
Is there a way to allow elements with no IRanges when subsetting an IRangesList
IRanges
Biostrings
S4Vectors
written 11 months ago by
Christine Jones
• 0
1
vote
1
reply
621
views
DataFrame Character Truncation
S4Vectors
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
Dario Strbenac
★ 1.6k
0
votes
1
reply
499
views
Version 3.15 S4Vectors packages are missing
S4Vectors
updated 17 months ago by
shepherl
4.2k • written 17 months ago by
bounlu
• 0
2
votes
1
reply
697
views
DataFrame Printing User Control
S4Vectors
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Dario Strbenac
★ 1.6k
0
votes
2
replies
1.8k
views
Using dplyr commands with DataFrame objects
S4Vectors
24 months ago
GE
• 0
5
votes
6
replies
1.3k
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 2.1 years ago by
Hervé Pagès
16k • written 2.1 years ago by
Dario Strbenac
★ 1.6k
4
votes
4
replies
2.1k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 2.5 years ago by
Michael Steinbaugh
▴ 90
0
votes
1
reply
1.2k
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors
Aspli
updated 2.7 years ago by
Sophie
• 0 • written 2.7 years ago by
salvocomplicazioni1
• 0
11
votes
17
replies
3.7k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors
DataFrame
haven_labelled
haven
updated 2.9 years ago by
Danny Smith
▴ 20 • written 2.9 years ago by
Daniel E. Weeks
▴ 30
0
votes
3
replies
2.2k
views
How can i fix this problem in R
S4Vectors
DESeq2
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
Habib
• 0
1
vote
7
replies
3.8k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors
pagoo
3.3 years ago
MauriAndres
• 0
0
votes
6
replies
2.4k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 3.6 years ago by
James W. MacDonald
68k • written 3.6 years ago by
hasche
• 0
4
votes
1
reply
1.5k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 3.8 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Charles Plessy
▴ 180
2
votes
3
replies
1.4k
views
S4Vectors, strange metadata behavior
GRangesList
S4Vectors
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
hauken_heyken
▴ 80
0
votes
6
replies
2.5k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
4.0 years ago
Richard
• 0
3
votes
2
replies
5.4k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
Dario Strbenac
★ 1.6k
2
votes
1
reply
1.6k
views
DataFrame or DFrame
S4Vectors
updated 4.4 years ago by
Marcel Ramos
700 • written 4.4 years ago by
Dario Strbenac
★ 1.6k
0
votes
4
replies
2.2k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 4.8 years ago by
Hervé Pagès
16k • written 4.8 years ago by
ilysR
• 0
2
votes
0
replies
1.0k
views
News:
BioC2021 organizing committee
BioC2021
S4Vectors
4.9 years ago
Levi Waldron
★ 1.1k
1
vote
11
replies
3.2k
views
Error uploading deseq2
deseq2
S4Vectors
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
margarita.bogorad
• 0
2
votes
9
replies
2.6k
views
S4Vectors not loading
S4Vectors
5.6 years ago
Panos Balomenos
• 0
0
votes
7
replies
4.1k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors
GenomicRanges
BiocManager
6.0 years ago
james.dalgleish
▴ 30
0
votes
1
reply
1.2k
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
6.1 years ago
Aditya
▴ 160
1
vote
1
reply
1.1k
views
Checking if to DataFrames are identical
S4Vectors
DataFrame
6.1 years ago
maltethodberg
▴ 180
1
vote
3
replies
2.5k
views
Correct way to split and unsplit a DataFrame
s4vectors
iranges
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
Michael Steinbaugh
▴ 90
2
votes
3
replies
2.1k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges
rtracklayer
VariantAnnotation
S4Vectors
SummarizedExperiment
updated 6.2 years ago by
Steve Lianoglou
★ 13k • written 6.2 years ago by
james.dalgleish
▴ 30
0
votes
2
replies
2.3k
views
S4Vectors (and others) install error
s4vectors
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
z.crane-smith
• 0
5
votes
2
replies
1.3k
views
DataFrame after splitting and back
DataFrame
S4Vectors
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
Laurent Gatto
1.6k
3
votes
12
replies
3.8k
views
Trouble installing GOSemSim
GOSemSim
S4Vectors
6.6 years ago
sergi.picart
▴ 20
5
votes
10
replies
3.1k
views
caught segfault error when loading S4Vectors package in R
R
S4Vectors
segfault
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
ecg1g15
▴ 30
0
votes
2
replies
1.8k
views
DataFrame matrix subsetting
DataFrame
subsetting
S4Vectors
updated 6.7 years ago by
Hervé Pagès
16k • written 6.8 years ago by
felix.ernst
• 0
0
votes
4
replies
2.4k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges
S4Vectors
dplyr
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
liz.ingsimmons
▴ 140
2
votes
2
replies
2.8k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
Momo
• 0
0
votes
1
reply
1.8k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors
R-3.5.1
6.8 years ago
zhang303
• 0
0
votes
1
reply
3.8k
views
problem in loading Deseq2
deseq2
S4Vectors
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
roghaiyeh.safari
• 0
0
votes
15
replies
3.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 7.2 years ago by
becker.gabriel
▴ 10 • written 7.2 years ago by
chokoiboko
• 0
0
votes
0
replies
1.4k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
7.3 years ago
endrebak85
▴ 40
3
votes
12
replies
2.9k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
TriS
▴ 200
2
votes
1
reply
1.2k
views
Adding a column to a class that contains DataFrame
s4vectors
7.8 years ago • updated 7.7 years ago
Michael Love
43k
1
vote
4
replies
3.1k
views
biocLite updating problem with Ubuntu 17.10
ubuntu
biocgenerics
s4vectors
IRanges
annotationdbi
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
KRA
• 0
4
votes
6
replies
2.1k
views
breakTies for a Hits-object based on value in mcols?
s4vectors
hits
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
maltethodberg
▴ 180
1
vote
2
replies
2.2k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation
s4vectors
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
dchmiller
• 0
6
votes
3
replies
4.7k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2
deseq
merge data frames
cbind
s4vectors
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
kirannbishwa01
▴ 20
1
vote
0
replies
1.9k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors
bumphunter
txdb.hsapiens.ucsc.hg38.knowngene
8.0 years ago
Leonardo Collado Torres
★ 1.1k
10
votes
10
replies
3.2k
views
Does package S4Vectors break ifelse?
S4Vectors
ifelse
updated 8.3 years ago by
balwierz
▴ 40 • written 10.2 years ago by
Peter Langfelder
★ 3.0k
1
vote
1
reply
1.2k
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
fedor
• 0
4
votes
10
replies
3.0k
views
Printing DataFrame with nested DataFrames causes error
s4vectors
dataframe
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Welliton de Souza
▴ 70
3
votes
8
replies
3.2k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors
Matrix
8.7 years ago
peter.kharchenko
▴ 30
0
votes
5
replies
2.1k
views
Using S4Vectors within a package
Package
s4vectors
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
my4
▴ 10
66 results • Page
1 of 2
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Replies
Comment: gene Set with high AUC score but no cells assigned to cell type
by
eja.hdrer33ge.r.m
• 0
Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA
by
Michael Love
43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
James W. MacDonald
68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Votes
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
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