Showing : s4vectors • reset
0
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93
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Version 3.15 S4Vectors packages are missing
S4Vectors
updated 7 days ago by 3.9k • written 7 days ago by • 0
2
votes
1
reply
285
views
DataFrame Printing User Control
S4Vectors
updated 5 months ago by 16k • written 5 months ago by ★ 1.5k
0
votes
2
replies
577
views
Using dplyr commands with DataFrame objects
S4Vectors
6 months ago GE • 0
5
votes
6
replies
654
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DataFrame Construction With Non-standard Column
S4Vectors
updated 7 months ago by 16k • written 7 months ago by ★ 1.5k
4
votes
4
replies
1.2k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 12 months ago by ▴ 90
0
votes
1
reply
655
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 15 months ago by • 0 • written 15 months ago by • 0
11
votes
17
replies
2.3k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 17 months ago by ▴ 20 • written 17 months ago by ▴ 30
0
votes
3
replies
1.3k
views
How can i fix this problem in R
S4Vectors DESeq2
updated 22 months ago by ★ 4.1k • written 22 months ago by • 0
1
vote
7
replies
2.3k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
23 months ago MauriAndres • 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.3 years ago by 16k • written 2.4 years ago by ▴ 180
2
votes
3
replies
927
views
S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 80
0
votes
6
replies
1.9k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
2.6 years ago • updated 2.5 years ago Richard • 0
3
votes
2
replies
2.6k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by 65k • written 2.9 years ago by ★ 1.5k
2
votes
1
reply
882
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by 690 • written 2.9 years ago by ★ 1.5k
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
2
votes
0
replies
714
views
News: BioC2021 organizing committee
BioC2021 S4Vectors
3.5 years ago Levi Waldron ★ 1.1k
1
vote
11
replies
1.7k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
2
votes
9
replies
1.7k
views
S4Vectors not loading
S4Vectors
4.2 years ago Panos Balomenos • 0
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
772
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors methods
4.7 years ago Aditya ▴ 160
1
vote
1
reply
802
views
Checking if to DataFrames are identical
S4Vectors DataFrame
4.7 years ago maltethodberg ▴ 180
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 90
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
0
votes
2
replies
1.4k
views
S4Vectors (and others) install error
s4vectors
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
5
votes
2
replies
920
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.0 years ago by ★ 11k • written 5.0 years ago by 1.6k
3
votes
12
replies
2.5k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
5
votes
10
replies
2.2k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.3 years ago by 16k • written 5.3 years ago by • 0
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 140
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 5.3 years ago by ★ 28k • written 5.3 years ago by • 0
0
votes
1
reply
1.5k
views
Is S4Vectors not able to install in R-3.5.1?
S4Vectors R-3.5.1
5.4 years ago zhang303 • 0
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
updated 5.8 years ago by ▴ 10 • written 5.8 years ago by • 0
0
votes
0
replies
972
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
5.9 years ago endrebak85 ▴ 40
3
votes
12
replies
2.1k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 200
2
votes
1
reply
894
views
Adding a column to a class that contains DataFrame
s4vectors
6.3 years ago Michael Love 42k
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.4 years ago by ★ 11k • written 6.4 years ago by ▴ 180
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
5
votes
3
replies
3.8k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 6.6 years ago by 42k • written 6.6 years ago by ▴ 10
1
vote
0
replies
1.3k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
6.6 years ago Leonardo Collado Torres ★ 1.0k
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 6.8 years ago by ▴ 40 • written 8.8 years ago by ★ 3.0k
1
vote
1
reply
958
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.1 years ago by ★ 11k • written 7.1 years ago by • 0
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 70
3
votes
8
replies
2.5k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.2 years ago peter.kharchenko ▴ 30
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package s4vectors
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
0
votes
1
reply
962
views
DataFrame showAsCell function
s4vectors
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
5
votes
5
replies
1.5k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by • 0
2
votes
1
reply
942
views
Question about parallel manipulation on CharacterList objects
s4vectors IRanges
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 450
50 results • Page 1 of 1
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Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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Scholar to Michael Love 42k
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