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Showing :
software error
•
reset
2
votes
20
replies
2.7k
views
plotPCA in DESeq2
software error
deseq2
3.9 years ago
yueli7
▴ 20
4
votes
17
replies
5.4k
views
Upgrade to 3.1 error
software error
updated 8.8 years ago by
Bogdan
▴ 670 • written 9.0 years ago by
Luobin
▴ 10
1
vote
16
replies
3.6k
views
Error: could not find function "dba"
software error
diffbind
dba
7.5 years ago
mmarins
• 0
7
votes
14
replies
3.6k
views
Issue setting up BiocManager due to mgcv / clang?
software error
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
benoahb
• 0
0
votes
14
replies
1.7k
views
Error while opening Mart with biomaRt package
software error
ensembl
biomart
4.4 years ago
loicborcard01
• 0
1
vote
13
replies
5.7k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
7.8 years ago
phpaul2010
• 0
1
vote
12
replies
1.4k
views
negative one "-1" values in index files using Rsubread
software error
rsubread
updated 4.1 years ago by
Yang Liao
▴ 380 • written 4.1 years ago by
peter.r.hoyt
• 0
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
4.5 years ago
nils.hassel
• 0
2
votes
12
replies
2.3k
views
Synapter - makeMaster() and synergise() functions warnings/fails
software error
warnings
synapter
9.4 years ago
sogueta
• 0
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.5 years ago by
alessandro brozzi
▴ 120
1
vote
12
replies
5.5k
views
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
software error
rtracklayer
bioconductor
openssl
5.4 years ago
ruan_wei_dong
• 0
3
votes
12
replies
2.5k
views
DESeq2 Installation Errors
deseq2
software error
updated 20 months ago by
kerendanan1
• 0 • written 3.6 years ago by
price793
• 0
7
votes
12
replies
2.0k
views
readGAlignmentPairs fail to read paired end data
software error
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
Jiping Wang
▴ 90
1
vote
11
replies
6.9k
views
Unable to install packages
software error
deseq2
updated 5.1 years ago by
Anh N Tran
• 0 • written 5.1 years ago by
efratsh
▴ 10
5
votes
11
replies
1.6k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error
Rsubread
updated 3.9 years ago by
Gordon Smyth
50k • written 3.9 years ago by
barrel0luck
• 0
5
votes
11
replies
2.6k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.4 years ago by
Levi Waldron
★ 1.1k • written 7.4 years ago by
morganx
▴ 10
6
votes
11
replies
3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics
svg
software error
updated 7.9 years ago by
Stane
▴ 40 • written 9.4 years ago by
Paulo Nuin
▴ 200
0
votes
11
replies
4.3k
views
Examples from keggList in KEGGREST don't all work
software error
keggrest
8.2 years ago
Bryan Hanson
• 0
0
votes
11
replies
2.6k
views
package 'ChAMP' demo/test code fails at champ.CNA()
software error
updated 7.3 years ago by
Yuan Tian
▴ 90 • written 9.3 years ago by
Hamid Bolouri
▴ 90
2
votes
11
replies
1.9k
views
failure importing data with tximport with error information
software error
tximport
hdf5
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
me5537
▴ 10
4
votes
10
replies
1.6k
views
DESeq2 interacting with agricolae
deseq2
software error
updated 7.7 years ago by
Wolfgang Huber
★ 13k • written 7.7 years ago by
mikael.lenz.strube
• 0
0
votes
10
replies
2.2k
views
tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
software error
RNAseq
tximport
R
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
ScafioRuo
• 0
2
votes
10
replies
2.2k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
JustGettinStarted
• 0
0
votes
9
replies
1.7k
views
i can't install metade package
software error
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
1006920318
• 0
2
votes
9
replies
2.1k
views
i can't find cummeRbund package
software error
cuumeRbund
rna-seq
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Angel
▴ 40
1
vote
9
replies
1.6k
views
IONiseR error when using the readFast5Summary function on nanopore data
ioniser
software error
bioconductor
7.5 years ago
mv340788
• 0
10
votes
9
replies
6.5k
views
CAMERA error: $ operator not defined for this S4 class
software error
CAMERA
updated 8.8 years ago by
ckuhl
▴ 20 • written 8.8 years ago by
scott.walmsley
▴ 60
1
vote
9
replies
745
views
hypergraph package - kcores error
software error
hypergraph
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
john.horne
• 0
1
vote
9
replies
1.8k
views
Help running the nondetects::qpcrImpute on my data?
nondetects
software error
updated 6.2 years ago by
corocla
• 0 • written 6.3 years ago by
Ryan C. Thompson
★ 7.9k
2
votes
9
replies
2.0k
views
BiocParallel not proceeding
software error
updated 7.5 years ago by
Martin Morgan
25k • written 7.6 years ago by
petyuk
▴ 70
1
vote
9
replies
3.1k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.3 years ago
anders.tondell
▴ 30
3
votes
9
replies
4.7k
views
topGO "invalid argument to unary operator"
software error
topgo
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
fshodan
• 0
1
vote
8
replies
3.0k
views
GenomicFeatures package ERROR
software error
genomicfeatures
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
liangwu887
• 0
2
votes
8
replies
2.2k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt
software error
updated 2.8 years ago by
Mike Smith
★ 6.5k • written 3.9 years ago by
JINYI
• 0
4
votes
8
replies
2.1k
views
Don't let TopGo to trimm long GO names
go
software error
topgo
rna-seq
updated 15 months ago by
James W. MacDonald
65k • written 3.9 years ago by
morteza.aslanzadeh
▴ 30
3
votes
8
replies
10k
views
RDAVIDWebService - Unable to sendViaPost to url etc etc - server time out
software error
david
rdavidwebservice
updated 8.7 years ago by
oops324
• 0 • written 9.1 years ago by
TriS
▴ 200
2
votes
8
replies
1.6k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error
enrichGO
annotationHub
clusterProfiler
Job
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
bnajafpour
• 0
1
vote
8
replies
1.9k
views
SummarizedExperiment Error! expressionSet data structure
software error
summarizedexperiment
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
yifangt
▴ 20
0
votes
8
replies
1.5k
views
Error in running development version of PureCN
PureCN
software error
7.6 years ago • updated 7.5 years ago
hustlxc
• 0
1
vote
8
replies
2.4k
views
Database download ends with error for AnnotationHub
software error
9.0 years ago
Arman Shahrisa
▴ 20
7
votes
8
replies
2.6k
views
Very small bug in DESeq2
software error
7.6 years ago
arfranco
▴ 130
0
votes
8
replies
3.7k
views
The common error with ballgown has not been solved!
ballgown
software error
updated 7.2 years ago by
Jeff Leek
▴ 650 • written 7.2 years ago by
Sara
▴ 10
2
votes
8
replies
2.0k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 6.7 years ago by
Charles Plessy
▴ 180 • written 6.8 years ago by
orzechowska.mag
▴ 10
0
votes
8
replies
1.9k
views
Bioconductor SVN server error
software error
github
7.7 years ago
emathe
• 0
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error
BioGenerics
bioclite
6.5 years ago
p.janitza
▴ 50
0
votes
8
replies
2.3k
views
Combat in gene pattern error annotation
software error
ComBat
Gene Pattern
updated 6.4 years ago by
shaymaa_s_elgaafary
• 0 • written 8.7 years ago by
radhikaraheja
• 0
3
votes
8
replies
1.3k
views
please someone help me to run this code
software error
R
8.3 years ago
Angel
▴ 40
0
votes
8
replies
2.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 7.9 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
mousheng xu
▴ 10
1
vote
8
replies
1.6k
views
How to read variants into R from large dataset using VariantAnnotation
software error
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
PhiPhi
• 0
0
votes
8
replies
1.1k
views
Failed to read SDRF
software error
arrayexpressHTS
4.2 years ago
Ed Siefker
▴ 230
50 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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