Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
2
replies
99
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 23 hours ago by
ATpoint
★ 5.0k • written 3 days ago by
DN
• 0
0
votes
12
replies
535
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 1 day ago by
Gordon Smyth
53k • written 4 days ago by
chp265
• 0
0
votes
0
replies
32
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
3 days ago
Xenia
• 0
0
votes
0
replies
34
views
Justify title track when rotation = 0
Gviz
gviz
3 days ago
Xenia
• 0
0
votes
2
replies
195
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 1 day ago by
LillianaVolkman99
• 0 • written 10 days ago by
Omer
• 0
0
votes
6
replies
565
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 5 days ago by
Martin Morgan
25k • written 7 weeks ago by
Benjamin
• 0
0
votes
1
reply
227
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 4 days ago by
ATpoint
★ 5.0k • written 8 days ago by
ja569116
• 0
1
vote
3
replies
254
views
limpa analysis advice
limpa
updated 5 days ago by
Gordon Smyth
53k • written 8 days ago by
SamGG
▴ 360
0
votes
0
replies
63
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
8 days ago
laurah ondari
• 0
4
votes
2
replies
250
views
When to use edgeR or limma
edgeR
limma
updated 8 days ago by
Gordon Smyth
53k • written 11 days ago by
abzhang97
• 0
1
vote
3
replies
188
views
Incosistencies in buildSNNGraph() function
scran
seurat
written 14 days ago by
Lucas
• 0
0
votes
2
replies
776
views
A problem occurs when running the monocle2
monocle
written 4 months ago by
yuheng_yang
• 0
0
votes
7
replies
413
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 3 days ago by
Gordon Smyth
53k • written 10 days ago by
emily.wolfrum
• 0
0
votes
1
reply
89
views
Questions about bacon QC and correction on EWAS results
bacon
11 days ago
sup0903
• 0
3
votes
4
replies
259
views
Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
11 days ago • updated 10 days ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
111
views
Development of MSstat workflow to analyze DIA time series data
MSstats
updated 11 days ago by
Gordon Smyth
53k • written 11 days ago by
sithurandi
• 0
0
votes
0
replies
131
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
11 days ago
srkingwu
• 0
8
votes
8
replies
2.9k
views
Confounded design, batch effect correction (edgeR)
rnaseq
edger
differential gene expression
batch effect
written 7.4 years ago by
Laura
▴ 20
0
votes
0
replies
65
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
12 days ago
henry.tietz
• 0
3
votes
4
replies
373
views
Clarification on counting in Rsubread (featureCounts)
featureCounts
Rsubread
updated 11 days ago by
Gordon Smyth
53k • written 5 weeks ago by
Luca
• 0
0
votes
0
replies
62
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
12 days ago
Frances Turner
▴ 20
0
votes
1
reply
90
views
How to convert .raw data for use in xcms
xcms
written 12 days ago by
Monica
• 0
0
votes
1
reply
165
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
updated 10 hours ago by
TikTs33ssalpc
• 0 • written 12 days ago by
rubina.tabassum
• 0
1
vote
1
reply
122
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
updated 10 hours ago by
TikTs33ssalpc
• 0 • written 15 days ago by
shepherl
4.3k
0
votes
1
reply
464
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 11 months ago by
info
▴ 10
0
votes
1
reply
343
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 6 months ago by
Wei Shi
★ 3.6k
0
votes
2
replies
2.5k
views
ChAMP pipeline error (champ.import)
software error
written 6.8 years ago by
mhebba
• 0
0
votes
2
replies
266
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
17 days ago • updated 3 days ago
Andrew Pattison
• 0
0
votes
0
replies
135
views
Job:
Jobs at Ensembl
ensembldb
18 days ago
Aleena_Ensembl
▴ 30
0
votes
0
replies
11
views
Spam:
Is there a way to map Excel fields to VCF contacts for accurate conversion?
ComputationalChemistry
Technology
Software
Website
updated 18 days ago by
shepherl
4.3k • written 18 days ago by
witebir963
0
0
votes
0
replies
84
views
Job:
Job:Computational Biologist position at the University of Alabama at Birmingham
hiring
RNASeq
JobPosting
SingleCell
SpatialData
19 days ago
lianov
• 0
2
votes
3
replies
226
views
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 19 days ago by
Victor
▴ 10
2
votes
4
replies
233
views
Converting Probe IDs to HGNC symbols
Annotation
biomaRt
GEOquery
written 22 days ago by
Manav
▴ 10
0
votes
3
replies
286
views
How to do differential expresion across time serise with edgeR?
edgeR
timecoursedata
updated 21 days ago by
Gordon Smyth
53k • written 22 days ago by
petergrahamclark
▴ 10
2
votes
3
replies
457
views
Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures
Guitar
txdbmaker
GenomicRanges
written 26 days ago by
ferran.llobet.cabau
▴ 10
0
votes
2
replies
181
views
ATACseq rudimentary questions
ATACSeq
DiffBind
28 days ago • updated 22 days ago
4747
• 0
1
vote
1
reply
227
views
How to install packages such as TCGAbiolinks, SumarizedExperiment?
TCGAbiolinks
SummarizedExperiment
updated 24 days ago by
Gordon Smyth
53k • written 24 days ago by
NewRUser
• 0
0
votes
4
replies
5.6k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 2.8 years ago by
mauricio.microbiol
• 0
4
votes
2
replies
408
views
Limma-voom sample weights and impact on DEG numbers
limma
4 weeks ago • updated 19 days ago
A.Barden
▴ 20
0
votes
1
reply
274
views
wgcna module preseravtion taking too long?
WGCNA
updated 4 weeks ago by
ATpoint
★ 5.0k • written 5 weeks ago by
lamia11me
• 0
0
votes
1
reply
359
views
Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 6 weeks ago by
Chaoability
• 0
0
votes
3
replies
342
views
DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
sva
lfcshrink
DESeq2
5 weeks ago • updated 8 days ago
ja569116
• 0
0
votes
5
replies
2.9k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by
hebda
• 0
0
votes
3
replies
298
views
segfault in edgeR glmQLFit
edgeR
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
Mark
• 0
0
votes
4
replies
605
views
How does contrasts.fit do in limma to extract comparisons with a model having interaction terms?
limma
updated 19 days ago by
jtsy6383
• 0 • written 5 weeks ago by
Durian
• 0
0
votes
1
reply
271
views
News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
written 5 weeks ago by
laurah ondari
• 0
0
votes
1
reply
167
views
NUPOP usage
TOAST
updated 6 weeks ago by
shepherl
4.3k • written 6 weeks ago by
Mohammad
• 0
1
vote
2
replies
376
views
News:
Important: Bioconductor Release 3.22 Delayed
release
written 12 weeks ago by
shepherl
4.3k
0
votes
1
reply
245
views
PTM analysis in LIMPA
limpa
updated 9 days ago by
Gordon Smyth
53k • written 7 weeks ago by
Diego FGR
• 0
1
vote
1
reply
368
views
News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
mart
biomaRt
ensembldb
updated 1 day ago by
Hugo Gruson
• 0 • written 7 weeks ago by
Ensembl_Jorge
▴ 10
46,730 results • Page
1 of 935
Recent ...
Replies
Comment: Open Positions for Doctoral Researchers in Molecular Medicine
by
TikTs33ssalpc
• 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application
by
TikTs33ssalpc
• 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards
• All
Popular Question
to
ATpoint
★ 5.0k
Popular Question
to
Martin Morgan
25k
Teacher
to
Michael Love
43k
Popular Question
to
A
• 0
Popular Question
to
Lluís Revilla Sancho
▴ 760
Locations
• All
Russia,
1 hour ago
The Netherlands,
2 hours ago
The city by the bay,
2 hours ago
Australia,
2 hours ago
Poland,
3 hours ago
Traffic: 1003 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6