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updated 4.9 years ago by ★ 5.2k • written 4.9 years ago by ▴ 40
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4.9 years ago Guandong Shang ▴ 40
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TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
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updated 4.9 years ago by 68k • written 4.9 years ago by • 0
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4.9 years ago cossardg ▴ 10
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updated 4.9 years ago by 21k • written 4.9 years ago by ▴ 20
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DEseq2 comparison order
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how to use select() to retrieve GO Biological Process Ancestors?
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updated 4.9 years ago by 25k • written 4.9 years ago by ★ 4.1k
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SingleCellExperiment package: storing reducedDims metadata
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4.9 years ago • updated 4.8 years ago bge • 0
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miRNAtap target prediction package
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4.9 years ago Maryam • 0
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4.9 years ago ahsindoomilup • 0
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4.9 years ago wrzl • 0
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Defining Factors in DESeq2
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updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 30
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differential loop using DESeq2
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updated 4.9 years ago by 43k • written 4.9 years ago by • 0
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Regarding Genome versions
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4.9 years ago Konstantinos Yeles ▴ 90
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Creating a model matrix for three age groups using two-colour arrays
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updated 4.9 years ago by 68k • written 4.9 years ago by • 0
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4.9 years ago analeonpalacio ▴ 10
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News: Community engagement and outreach award
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PCAtools - change colour of points
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updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
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Having error with clusterProfiler::bitr
clusterProfiler
updated 4.9 years ago by ★ 4.1k • written 4.9 years ago by • 0
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ChIPSeeker covplot function, fix yaxis
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4.9 years ago jordi.planells • 0
1
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HTQPCR - create qPCR set from a matrix of CT values
HTqPCR
updated 4.9 years ago by 53k • written 10.0 years ago by ▴ 40
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Using limma for the analysis of qPCR data
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updated 4.1 years ago by ▴ 380 • written 4.9 years ago by ▴ 680
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1
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Number of non-empty drops returned by emptyDrops() depends on value of test.ambience
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updated 4.9 years ago by ★ 29k • written 4.9 years ago by ▴ 760
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(icetea) detectTSS all the scores = NA
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4.9 years ago izzy.coimbra • 0
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ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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4.9 years ago • updated 4.8 years ago lhd • 0
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4.9 years ago bastien_chassagnol • 0
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DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
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updated 4.8 years ago by • 0 • written 4.9 years ago by ▴ 30
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4
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DiffBind dba.count error
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4.9 years ago mdidish ▴ 10
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4.9 years ago k.vitting.seerup ▴ 120
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Error coercing LowRankMatrix to dgCMatrix
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updated 4.9 years ago by ▴ 50 • written 4.9 years ago by ▴ 70
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could not find function "mplus.view.plots"
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updated 4.9 years ago by 4.2k • written 4.9 years ago by • 0
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0
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Surrogate variable, celltype composition correction and overfitting in DNA methylation data
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4.9 years ago epibio ▴ 10
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avereps function by limma package
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4.9 years ago lily ▴ 20
1
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1
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DESeq2 time course analysis
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updated 4.9 years ago by 43k • written 4.9 years ago by • 0
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Unexpected results
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written 4.9 years ago by ▴ 10
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log2 Fold Change in DESeq2 is not identical to FC calculated from normalized count when betaPrior is turned off
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4.9 years ago Yanling ▴ 10
0
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2
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Design Matrix for DESeq2 or EdgeR
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updated 4.9 years ago by 43k • written 4.9 years ago by • 0
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updated 3.9 years ago by ▴ 60 • written 11.1 years ago by ▴ 130
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TCGAbiolinks connection error for GDCquery
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4.9 years ago Sophie Marion de Proce • 0
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How to filter cells for scRNA-seq analysis based on expression level of surface marker?
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4.9 years ago Iris Wing To • 0
2
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3
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one stratum from vsn2
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updated 4.9 years ago by ★ 13k • written 4.9 years ago by • 0
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Can I create a gene set using GAGE?
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written 4.9 years ago by ▴ 40
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Error in GenomeInfoDb:::makeNewSeqnames
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4.9 years ago Konstantinos Yeles ▴ 90
1
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2
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How does DiffBind deal with single-end and paired-end data together
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4.9 years ago Xiaojie Cheng • 0
46,695 results • Page 138 of 934
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
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The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
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