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1.1k
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Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
GenomicRanges
GPos
5.7 years ago
Charles Plessy
▴ 180
0
votes
0
replies
1.2k
views
Potential oversimplification in the overlap function
ChIPseeker
5.7 years ago
konsta.kukkonen
• 0
0
votes
1
reply
1.0k
views
RSAMTOOLS to analyse BED FILES
RSAMTOOLS
BED-FILE
5.7 years ago
r.mulder01
• 0
0
votes
0
replies
1.0k
views
readGenbank can't handle multiple contigs?
genbankr
parsing
5.7 years ago
sean.c.m.booth
• 0
1
vote
3
replies
1.3k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
5.7 years ago
mirkocelii
▴ 40
2
votes
4
replies
1.4k
views
MEDIPS results differ with sample ordering
MEDIPS
edgeR
updated 5.7 years ago by
Lukas Chavez
▴ 570 • written 6.0 years ago by
keegan
▴ 60
1
vote
0
replies
1.7k
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
5.7 years ago
Johannes Rainer
★ 2.1k
3
votes
4
replies
1.4k
views
Why BiocManager try to reinstall dependencies already installed?
R
updated 5.7 years ago by
Robert Castelo
★ 3.4k • written 5.7 years ago by
MatthewP
• 0
3
votes
1
reply
1.6k
views
Output lfc for Wilcox-based findMarkers
scran
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
ATpoint
★ 5.0k
1
vote
12
replies
3.9k
views
GSVA (running group samples separately)
GSVA
updated 5.7 years ago by
Robert Castelo
★ 3.4k • written 5.7 years ago by
Jenn
▴ 30
1
vote
2
replies
2.3k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
5.7 years ago
Raito92
▴ 60
1
vote
3
replies
2.4k
views
tximeta on STAR-aligned Salmon-quantified output
tximeta
salmon
STAR
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
josephbrown
▴ 10
4
votes
6
replies
1.9k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
5.7 years ago
mirkocelii
▴ 40
5
votes
7
replies
1.7k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
5.7 years ago
abf
▴ 30
4
votes
5
replies
1.9k
views
DESeq2 Error from Installing a Package
deseq2
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
johanna.shen
▴ 10
0
votes
1
reply
741
views
pacbio long reads into DESeq2
deseq2
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
pwnoyce
• 0
3
votes
10
replies
3.8k
views
Reading multiple data segments from FCS 3.0 file
flowCore
flow cytometry
FCS 3.0
ncdfFlowSet
updated 3.7 years ago by
SamGG
▴ 360 • written 5.7 years ago by
alavy
▴ 30
4
votes
2
replies
2.4k
views
The Mac version of R always reports an error when installing WGCNA
software error
WGCNA
mac
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
562125035
• 0
0
votes
1
reply
1.2k
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 5.7 years ago by
Jake Wagner
▴ 310 • written 5.8 years ago by
noviello
• 0
1
vote
1
reply
1.4k
views
News:
Issues with annotation packages
annotation
news
release
News
5.7 years ago
kayla.interdonato
▴ 160
2
votes
2
replies
3.0k
views
How to Analyse Datasets from GEO
geo
rnaseq
deseq2
tpm
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
andrej.stoll.de
▴ 10
2
votes
3
replies
766
views
DESEQ2 error after adding batch in design
deseq2
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
vrehaman
• 0
1
vote
0
replies
1.3k
views
Functional enrichment analysis issue/ChIPseeker package
ChIPseeker
5.7 years ago
egbastakis
• 0
1
vote
2
replies
2.9k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
reinepapillon
• 0
6
votes
3
replies
2.2k
views
Multi-level experiments in Limma
limma
rnaseq
r
updated 5.7 years ago by
Gordon Smyth
53k • written 5.7 years ago by
A.Barden
▴ 20
0
votes
0
replies
839
views
Reference span vs. width of read in riboseqR
riboSeqR
5.7 years ago
ni2239
• 0
2
votes
1
reply
2.0k
views
DESeq Data Set From Matrix
deseq2
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
adR
▴ 40
0
votes
1
reply
1.1k
views
Missing ALL library in BiocManager using topGO
topGO
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
vladimir.vinarsky
• 0
0
votes
2
replies
3.9k
views
ggplot2 labeling and coloring specific Data points
ggplot2 package
Scatter plot
5.7 years ago
Hamidreza Hashemi
▴ 20
1
vote
2
replies
1.3k
views
About topGO error
go
updated 5.7 years ago by
abf
▴ 30 • written 5.7 years ago by
iguchi.a0218
• 0
2
votes
8
replies
4.5k
views
Unassigned reads in Rsubread FeatureCounts
Rsubread
updated 3.7 years ago by
Robert Castelo
★ 3.4k • written 5.7 years ago by
am39
• 0
0
votes
2
replies
1.2k
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
giti_gazisoltani
• 0
0
votes
1
reply
2.3k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
bharris
• 0
1
vote
3
replies
5.7k
views
"Permission denied" when installing TCGAbiolinks and RTCGAToolbox
installation
permission denied
RTCGAToolbox
TCGAbiolinks
5.7 years ago
julia.tutzauer
• 0
2
votes
4
replies
3.2k
views
full confounding between batch and treatment effects
batch effects
limma
batch-correction
RNAseq
RUVseq
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
bhakti.dwivedi
• 0
2
votes
2
replies
2.3k
views
subsetting VST counts from one dataset
deseq2
rna-seq
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
A
▴ 60
7
votes
5
replies
4.9k
views
Optimal cluster number identification using buildSNNgraph and igraph clusters
scran
gap statistics
single cell clustering
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
p.joshi
▴ 40
7
votes
6
replies
3.2k
views
sva ComBat implementation for multiple sources of batch effects
sva
combat
batch-adjustment
updated 5.7 years ago by
W. Evan Johnson
▴ 870 • written 5.7 years ago by
Zach Roe
▴ 10
2
votes
2
replies
1.6k
views
DSS understanding delta option and posterior probability
posterior pobability
statistical test
theory
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
stephanie.rialle
• 0
1
vote
3
replies
2.4k
views
Installation of Rgraphviz fails - missing gvc.h
software error
Rgraphviz
updated 2.5 years ago by
Pranav
• 0 • written 5.7 years ago by
gvds
• 0
0
votes
0
replies
1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot
ReactomePA
clusterProfiler
similarity coefficients
emapplot
5.7 years ago
jan.soderman
• 0
0
votes
2
replies
1.5k
views
how to design probes using decipher
R
decipher
5.7 years ago
hoonhuiyi
• 0
2
votes
4
replies
2.9k
views
Packages not working with R 4.0
software error
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
nanderson
• 0
3
votes
3
replies
1.4k
views
AnnotationForge run by three days and do not end
annotation
AnnotationForge
5.7 years ago
Marcelo Laia
▴ 450
8
votes
8
replies
2.1k
views
DESeq2 rlog blinding if calculating variance of expression?
deseq2
rlog
5.7 years ago
Zach Roe
▴ 10
0
votes
0
replies
835
views
How to generate custom MS database using CustomProDB?
r
proteomics
5.7 years ago
nattzy94
▴ 20
0
votes
1
reply
1.7k
views
DESeq2 and Heatmap for multiple conditions
deseq2
normalization
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
Hamidreza Hashemi
▴ 20
1
vote
1
reply
1.0k
views
Microarray Workflow - NA error
limma
affy
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
ammasakshay
• 0
11
votes
15
replies
6.0k
views
Annotation for Affymetrix GeneChip PrimeView.
annotation
updated 5.7 years ago by
Kevin Blighe
★ 4.0k • written 5.7 years ago by
ammasakshay
• 0
1
vote
2
replies
2.0k
views
Load data with rhdf5
rhdf5
python
updated 2.9 years ago by
alex46015
• 0 • written 5.7 years ago by
jose.wo
• 0
46,723 results • Page
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Comment: Question about the filterByExpr function inputs in edgeR
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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