1
vote
1
reply
3.3k
views
Rtracklayer exporting Granges object as bigwig error: Features cannot overlap
rtracklayer genomicranges granges
updated 5.8 years ago by ★ 11k • written 5.8 years ago by ▴ 20
3
votes
2
replies
1.8k
views
EBImage: Annotate multiple images in a grid with display()?
EBImage display
updated 5.8 years ago by ▴ 750 • written 5.8 years ago by ▴ 180
3
votes
6
replies
2.0k
views
Error:could not find function "DESeqDataSetFromHTSeqCount"
deseq2
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
2
votes
1
reply
1.0k
views
GO term "GO:1904936 interneuron migration" not found using biomart
biomart goterm
updated 5.8 years ago by ★ 6.6k • written 5.8 years ago by • 0
1
vote
1
reply
400
views
DESeq2 and adj p-value
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
votes
5
replies
2.9k
views
DESeq2: Comparing one sample with the mean of all
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
votes
2
replies
612
views
SWATH2stats Package installation error
software error
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
0
replies
947
views
Error in bmRequest - Internal Server Error (HTTP 500)
software error
5.8 years ago alexch.liu • 0
1
vote
1
reply
3.6k
views
Calculating TOM in blockwise WGCNA
WGCNA TOM block-wise
updated 5.8 years ago by ★ 3.0k • written 5.8 years ago by ▴ 10
0
votes
2
replies
615
views
EdgeR-Timeseries w nested design
deseq2 edger
updated 5.8 years ago by 53k • written 5.8 years ago by • 0
0
votes
1
reply
1.8k
views
Is LFC shrinkage necessary for all data?
deseq2 software error
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
2
votes
2
replies
888
views
DESeq2 for ChIP/CLIP-seq: one-sided test
deseq2 diffbind
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
votes
0
replies
954
views
Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
5.8 years ago heiko_kin ▴ 60
1
vote
1
reply
1.4k
views
Design edger with one or more continues variables
edger
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 40
4
votes
5
replies
2.0k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.8 years ago by ▴ 310 • written 5.8 years ago by • 0
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 2.8 years ago by • 0 • written 5.8 years ago by • 0
0
votes
0
replies
1.5k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.8 years ago jiyeon.choi2 • 0
1
vote
2
replies
1.4k
views
Rsamtools/GenomicAlignments segmentation faults
Rsamtools GenomicAlignments
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 10
0
votes
0
replies
1.5k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.8 years ago hasse.bossenbroek • 0
0
votes
2
replies
1.9k
views
Extract structural variant and flanking sequence from VCF and fasta, in R
VariantAnnotation Bioconductor VCF Structural variants R
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
0
replies
972
views
Problems with library(cummeRbund)
cummeRbund
updated 5.8 years ago by 4.3k • written 5.8 years ago by • 0
0
votes
0
replies
711
views
ViSEAGO, merge_enrich_terms error
go
5.8 years ago m.n • 0
2
votes
2
replies
1.5k
views
Mocking data for understanding interactions in DESeq2
deseq2 deseq
updated 5.8 years ago by ★ 3.8k • written 5.8 years ago by • 0
1
vote
4
replies
4.5k
views
Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp*`, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied onl…
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
votes
1
reply
1.6k
views
Fdrtool for RNA seq analysis
fdrtool
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
1
vote
5
replies
1.0k
views
Interpreting a paired limma model
limma microarray
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
5
replies
1.2k
views
TxDb.Hsapiens.UCSC.hg38.knownGene gene locus error?
annotation
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
14
replies
3.6k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by • 0
2
votes
2
replies
865
views
BioMart Error 28
software error biomart error28
updated 5.8 years ago by ★ 4.0k • written 5.8 years ago by ▴ 60
2
votes
4
replies
2.2k
views
After successful installation of package why it shows that Error?
software error microarray
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 20
0
votes
1
reply
2.3k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
5.8 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
1.7k
views
MetagenomeSeq: analysing paired samples
metagenomeseq paired samples microbiome
updated 5.8 years ago by • 0 • written 9.1 years ago by • 0
0
votes
1
reply
1.8k
views
pheatmap needs to be manually added to plot heatmaps
singler bug
5.8 years ago muad.abdelhay ▴ 10
3
votes
4
replies
2.3k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
5.8 years ago dakarai_esgdaille ▴ 10
0
votes
2
replies
1.4k
views
Generalised TOM over TOM for wgcna
WGCNA TOM
updated 5.8 years ago by ★ 3.0k • written 5.8 years ago by • 0
10
votes
0
replies
3.3k
views
News: Professor James Taylor
in memoriam News
5.8 years ago Martin Morgan 25k
1
vote
5
replies
2.9k
views
Need comments/advices for WGCNA network visualization
WGCNA
5.8 years ago minyaaa9058 ▴ 40
0
votes
0
replies
533
views
"Convert data" problem [SOLVED]
software error
5.8 years ago alexandre.dos-santos • 0
0
votes
0
replies
1.3k
views
News: Last Day to Submit New Packages for Bioconductor Release 3.11
deadline new submission bioconductor release News
5.8 years ago shepherl 4.3k
5
votes
2
replies
875
views
Intersecting two big dataframe
genomicrange intersect
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 20
0
votes
1
reply
773
views
Unexpected format to the list of available marts
annotation
updated 5.8 years ago by ★ 6.6k • written 5.8 years ago by • 0
2
votes
2
replies
996
views
BiomaRt, getBM error
biomaRt
updated 5.8 years ago by ★ 6.6k • written 5.8 years ago by • 0
0
votes
1
reply
1.1k
views
rebuild the ChAMP package
ChAMP
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
vote
3
replies
1.9k
views
csaw differential binding visualization
csaw
updated 5.8 years ago by ★ 29k • written 5.8 years ago by ▴ 140
0
votes
1
reply
1.3k
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
1
reply
466
views
DESeq2 for analyzing cell fractionation sequencing data
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
1
vote
1
reply
628
views
DESeq2 and large global transcription shut-down
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
3
votes
3
replies
2.7k
views
Calculation of Log2 fold change in DEXSeq
DEXSeq log2foldchange Tutorial
updated 4.4 years ago by ▴ 20 • written 5.8 years ago by ▴ 20
2
votes
4
replies
1.4k
views
Does my package fit into bioconductor (and further advice)?
calcium imaging imaging s4
updated 5.8 years ago by 4.3k • written 5.8 years ago by ▴ 10
0
votes
5
replies
2.0k
views
problem with DESeq2
deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
46,730 results • Page 172 of 935
Recent ...
Replies
Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0
thank you very much. https://www.biostars.org/p/9617271/
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards • All
Popular Question to ATpoint ★ 5.0k
Popular Question to Martin Morgan 25k
Teacher to Michael Love 43k
Popular Question to A • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, just now
United States, 4 minutes ago
USA, 33 minutes ago
United States, 42 minutes ago
Germany, 53 minutes ago
Traffic: 1592 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6