0
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1
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942
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DESeq2 analysis of multifactorial RNAseq experiment
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
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DESeq2 outlier flagging with 2 replicates
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 10
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1
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605
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Question: DESeqDataSetFromMatrix error: dds file described as <Object with null pointers>
deseq2
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
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Fold Change Calculation in edge package
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6.6 years ago soumyab.g ▴ 10
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updated 6.6 years ago by ★ 29k • written 6.6 years ago by • 0
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5
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Time course experiment using limma with voom
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updated 6.6 years ago by ★ 29k • written 6.6 years ago by • 0
10
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Removing batch effect with limma::removeBatchEffect() actually exacerbates the effect
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updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 30
1
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1
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848
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Error in function classes fdef mtable unable to find an inherited method for function assay for signature function missing
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
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2
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WGCNA on methylation data
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updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
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DESeqDataSetFromTximport gives <Object with null pointer>
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
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updated 6.6 years ago by 1.6k • written 6.6 years ago by • 0
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1
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[DESeq2] sequin [ANAQUIN] correction, too many factors in model
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
2
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[DeSeq2] Developmental timeline across seasons with non-independent sampling
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6.6 years ago João Pimenta • 0
1
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2
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Importing Salmon counts with tximport with host and virus genomes
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 50
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4
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Limma classical interaction model question
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updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 420
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2
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[read.metharray] Trying to parse different IDAT files, of different size and type.
limma minfi
updated 6.6 years ago by 53k • written 6.6 years ago by • 0
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2
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minfi error in read.metharray
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updated 4.8 years ago by • 0 • written 6.8 years ago by • 0
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CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
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updated 6.6 years ago by ★ 4.3k • written 6.6 years ago by • 0
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tximport discrepancy between TPMs and lengthScaledTPMs
tximport
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 50
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4
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FCSTransTransform() implementation in flowCore
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updated 6.6 years ago by ▴ 310 • written 6.6 years ago by ▴ 90
1
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1
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1.3k
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by • 0
0
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4
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1.6k
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DESeq2 log fold change
deseq2
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
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1
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1.5k
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All Pairwise Comparisons with DESeq2 While Controlling for Batch Effects: Does Reference Level Matter?
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 40
0
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DESeq2 Interaction Term Interpretation for Microbiome Data
deseq2 microbiome
updated 6.6 years ago by ★ 1.4k • written 6.6 years ago by • 0
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8
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Error, could not find function"file.edit", the install problem
illuminaHumanv2.db
6.6 years ago JXG1819 • 0
0
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0
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
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6.6 years ago jmaanaki • 0
0
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5
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process bed/bedGraph files with the same coordinates for all the samples
ChIPSeq
6.6 years ago Kath • 0
2
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5
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1.6k
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Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
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updated 6.6 years ago by 68k • written 6.6 years ago by • 0
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Aldex2 error following tutorial - complex study design
software error aldex2
6.6 years ago mstagliamonte ▴ 10
0
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1
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634
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how to change PCA plot in ropls
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updated 6.6 years ago by 4.3k • written 6.6 years ago by • 0
1
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805
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snp ids download
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6.6 years ago kamalesh.27.27.kamalesh • 0
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DESeq2 analysis with high within-group variability across several groups
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 20
1
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inferential replicates in Kallisto when summarising values via tximport
tximport
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 30
1
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Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq sva DSS
updated 6.6 years ago by ▴ 60 • written 6.7 years ago by ▴ 10
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4
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dmrseq error: promise already under evaluation??
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updated 6.6 years ago by ▴ 60 • written 6.6 years ago by • 0
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scale_counts targetSize normalization for recount2 counts
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updated 6.6 years ago by ★ 1.1k • written 6.7 years ago by • 0
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Convert Flowframe to matrix
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updated 6.6 years ago by ▴ 310 • written 6.6 years ago by • 0
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How to add row data to DESeqDataSetFromMatrix
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
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733
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How can I import data generated from different sources (salmon and gene count matrix) to generate DESeqDataSet object?
deseq2
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 30
1
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limma technical replicates and biological replicates in same design
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16.4 years ago • updated 6.6 years ago Gordon Smyth 53k
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limma technical replicates and biological replicates in the same design
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updated 6.6 years ago by 53k • written 16.4 years ago by ▴ 450
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ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
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updated 4.5 years ago by • 0 • written 6.6 years ago by ▴ 20
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8
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How to find out the genes that changes in expression by using gene level expression data matrix?
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6.6 years ago Jurat Shahidin ▴ 80
3
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7
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How to determine the cause of no difference between treatments in rnaseq?
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updated 6.6 years ago by 53k • written 6.6 years ago by • 0
0
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0
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622
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3 years on, continued "Error biexponential transform flowTrans"
software error
6.6 years ago dburner1 • 0
1
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2
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826
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Too many DEGs
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 20
0
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0
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Job: Computational 4D and single-cell expression analysis of animal development and regeneration
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6.6 years ago Wolfgang Huber ★ 13k
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IHW scale of problem
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updated 6.6 years ago by ★ 13k • written 6.7 years ago by ▴ 10
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DESeq2 GLM modelling and Wald's test
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updated 6.6 years ago by ▴ 40 • written 6.6 years ago by ▴ 10
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Small differences in limma with and without contrast matrix
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updated 6.6 years ago by ★ 29k • written 6.6 years ago by ▴ 90
46,741 results • Page 208 of 935
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Answer: Limma-voom sample weights and impact on DEG numbers by fawadsaafir • 0
<a href="https://deltaexecutoor.com/">delta apk</a> también conocido como Delta X, es una herramienta avanzada para ejecutar scripts perso…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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