Bioconductor Forum

votes

1.2k

views

destiny

updated 9.6 years ago by philipp.angerer • 0 • written 10.1 years ago by yang.chen • 0

vote

replies

1.7k

views

dexseq promoter utr

updated 9.6 years ago by Alejandro Reyes ★ 1.9k • written 9.6 years ago by joan.hooper • 0

votes

replies

7.2k

views

GSEA enrichment analysis gseabase

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by Matthias Z. ▴ 20

votes

replies

2.0k

views

limma rrbs bsseq

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by nhejazi • 0

votes

1.6k

views

affy RNAseq loess

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by JW • 0

votes

replies

2.1k

views

limma normalization sequencing edger

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by Yury Bukhman ▴ 20

vote

replies

2.0k

views

edaseq error rna-seq normalization

updated 9.6 years ago by davide risso ▴ 980 • written 9.6 years ago by reba.duncan • 0

votes

replies

2.2k

views

microarray affy limma

updated 9.6 years ago by Bernd Klaus ▴ 610 • written 9.6 years ago by AAAbdul • 0

votes

4.3k

views

deseq2 fdrtool

updated 9.6 years ago by Bernd Klaus ▴ 610 • written 9.6 years ago by dhibar ▴ 60

votes

replies

1.8k

views

TMM edgeR

9.6 years ago humberto_munoz • 0

votes

replies

7.1k

views

software error edger

9.6 years ago t3h096 • 0

votes

replies

1.4k

views

affymetrix affymetrix microarrays aroma

9.6 years ago gaiusjaugustus • 0

votes

1.5k

views

minfi bumphunter DNA methylation illumina450k

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by fleur_p90 • 0

votes

replies

7.9k

views

deseq2 colData rownames

9.6 years ago cagenet34 ▴ 20

votes

replies

3.7k

views

tximport readr

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by Hadi Gharibi • 0

vote

replies

1.5k

views

package submit package package updates

9.6 years ago francescodc87 • 0

votes

2.7k

views

diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 9.6 years ago by Rory Stark ★ 5.2k • written 9.6 years ago by alisonhanh.nguyen • 0

votes

replies

2.4k

views

r rstudio rgraphviz graphviz .dot

9.6 years ago pleaseteachmehowtodoit • 0

vote

1.5k

views

edgeR glmTreat

updated 9.6 years ago by Yunshun Chen ▴ 900 • written 9.6 years ago by James W. MacDonald 68k

votes

replies

1.0k

views

deseq2 rnaseq

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by tarek.mohamed ▴ 10

vote

replies

2.5k

views

dispersion edgeR

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by humberto_munoz • 0

votes

replies

3.6k

views

deseq2 error

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by nooshin ▴ 300

votes

replies

1.5k

views

edger r edger de

updated 9.6 years ago by Ryan C. Thompson ★ 7.9k • written 9.6 years ago by Emmanouela Repapi ▴ 20

votes

replies

6.3k

views

deseq2 rnaseq statistics

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by kissmatee • 0

votes

replies

1.8k

views

software engineer Job

9.6 years ago DanaFarber.Careers • 0

votes

replies

2.4k

views

pca variance deseq2 gene_id

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by NMostajo ▴ 10

vote

replies

4.4k

views

deseq2 sva svaseq pca

9.6 years ago Peter Alto ▴ 20

votes

replies

2.4k

views

R reportingtools deseq2 pvalue coef

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by NMostajo ▴ 10

vote

1.3k

views

Rnits microarray limma

9.6 years ago eu_sanisa • 0

votes

replies

901

views

deseq2

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by philippe.veber • 0

votes

replies

1.5k

views

biomart regulatory ensemble mart ensembldb

updated 9.6 years ago by Thomas Maurel ▴ 800 • written 9.6 years ago by Sigve Nakken ▴ 50

votes

replies

5.6k

views

differential expression normalization deseq2

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by mariakarand ▴ 20

votes

replies

1.8k

views

australia Job

9.6 years ago Gordon Smyth 53k

votes

1.5k

views

shortread

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by mictadlo ▴ 10

vote

replies

1.4k

views

limma edgeR

9.6 years ago Bogdan ▴ 670

votes

replies

1.7k

views

deseq2 rlog transformation vst

9.6 years ago ldetorrente ▴ 10

votes

replies

2.9k

views

WGCNA rcytoscape network analysis

updated 9.6 years ago by Paul Shannon ▴ 470 • written 9.6 years ago by christopher.clarskon15 ▴ 20

votes

replies

1.6k

views

crisprseek grna searching bsgenome forge offtarget analysis

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by rajewski23 • 0

votes

1.6k

views

GOstat GOstats

9.6 years ago ccanchaya • 0

votes

2.6k

views

edger pvalue sample size

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by Venu Pullabhatla ▴ 40

votes

2.7k

views

neqc illumina geo limma

updated 9.6 years ago by Gordon Smyth 53k • written 9.6 years ago by akridgerunner ▴ 30

votes

replies

1.7k

views

somatic signature mutational signature

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by sj1 ▴ 10

vote

1.9k

views

convert aminoacid-onlettercode cDNA

9.6 years ago arvind90.psc • 0

votes

replies

1.6k

views

exome dnaseq WES

9.6 years ago arvand.akbari • 0

votes

replies

2.9k

views

limma

updated 2.4 years ago by Gordon Smyth 53k • written 9.6 years ago by nathan • 0

votes

replies

1.5k

views

limma rnaseq

updated 9.6 years ago by Steve Lianoglou ★ 13k • written 9.6 years ago by Bogdan ▴ 670

votes

1.4k

views

lpsymphony R parameters control warm start

updated 9.6 years ago by Wolfgang Huber ★ 13k • written 9.6 years ago by chiel • 0

votes

replies

2.6k

views

biomart granges findoverlaps

updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by alessandro.pastore ▴ 20

votes

replies

3.3k

views

genomicfeatures

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by Ben Mansfeld • 0

votes

replies

3.7k

views

bsgenome r

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by tlgolan • 0

46,703 results • Page 390 of 935

Recent ...

Replies

Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k

The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…

Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0

Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…

Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0

Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…

Comment: nice 3D displays for PCA analysis by adam80haynes • 0

That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…

Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0

The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …

Votes

A: limma-voom duplicateCorrelation once or twice, difference?

A: limma: comparison of repeat measurements - blocking or within-subject correlatio

Answer: DecideTest vs topTAGs in edgeR

A: LIMMA time series spline model.matrix design setup

Answer: Limma-voom sample weights and impact on DEG numbers

Awards • All

Teacher to Gordon Smyth 53k