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2.1k
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RSubread 0% mapping
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10.1 years ago Jo ▴ 30
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BLAST in R
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2
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updated 10.1 years ago by 53k • written 10.1 years ago by ▴ 270
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6
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Understanding and creating various comparisons with model.matrix in limma regarding microarrays
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10.1 years ago Konstantinos Yeles ▴ 90
1
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1
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1.7k
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embed url in pathview images
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updated 10.1 years ago by ★ 1.6k • written 10.1 years ago by • 0
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2
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updated 10.1 years ago by ▴ 230 • written 10.1 years ago by • 0
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7
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GO.db installation error
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2
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CEL to Cibersort mix files, fails find Affymatrix specs
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10.1 years ago thrabe • 0
6
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2
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updated 10.1 years ago by ★ 6.8k • written 10.1 years ago by ▴ 30
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ComBat error message
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0
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STAR_how many mismatches to allow if the read length is 100 bp in RNA-seq data
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10.1 years ago tg369 ▴ 10
0
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5
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2.3k
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CSAW: Error: could not find function "normOffsets"
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updated 10.1 years ago by ★ 29k • written 10.1 years ago by ▴ 30
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5
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2.0k
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model matrix DESeq2 1.10
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10.1 years ago juliah • 0
1
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1
reply
1.7k
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edgeR for without Replicate
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updated 10.1 years ago by ★ 29k • written 10.1 years ago by • 0
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line colors plotRangesLinkedToData
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10.1 years ago Alejandro Reyes ★ 1.9k
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4
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IONiseR readFast5Summary Error
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updated 10.1 years ago by ★ 6.6k • written 10.1 years ago by • 0
1
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0
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1.9k
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Meta-analysis by MetaQC, MetaDE, MetaPath
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10.1 years ago Agaz Hussain Wani ▴ 260
0
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3
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Problem with DESeq2 installation (RcppArmadillo error)
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updated 10.1 years ago by 43k • written 10.1 years ago by • 0
4
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4
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2.2k
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Limma Nuisance Variable in an Interaction Model
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updated 10.1 years ago by ★ 7.9k • written 10.1 years ago by ▴ 370
0
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1
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1.6k
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Parsing raw Axiom .CEL files using affy2sv R package
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0
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1
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ShortRead::FastqStreamer() causes segfault
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10.1 years ago Watal M. Iwasaki ▴ 10
1
vote
6
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2.4k
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MSGFgui tries to locate MSGF.zip from a nonexistent UCSC source
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10.1 years ago Owen.Leiser • 0
0
votes
3
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1.6k
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intron/exon spanning probes present in the microarray
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10.1 years ago serpalma.v ▴ 60
0
votes
1
reply
1.7k
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Appropriate selection of DE list in limma before and after implementation of arrayWeights in conjuction with duplicateCorrelation functions
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10.1 years ago svlachavas ▴ 840
0
votes
4
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Replicate for DESeq2
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10.1 years ago Sushant Pawar • 0
0
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9
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3.5k
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IRanges: reduce(), findOverlaps(), and intersect() by group
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10.1 years ago pesquivel • 0
1
vote
1
reply
5.0k
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Statistical power of limma vs mixed model approach to analyze microarray and differential proteomics/peptidomics experiments and Poisson/binomial mix…
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updated 10.1 years ago by 53k • written 12.5 years ago by ▴ 60
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3
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updated 10.1 years ago by 53k • written 11.1 years ago by • 0
3
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1
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Rsubread error when aligning (- FATAL: INFLATE-ERROR=-5)
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updated 10.1 years ago by ★ 3.6k • written 10.1 years ago by ▴ 420
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4
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preprocessFunnorm in minfi
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updated 10.1 years ago by 68k • written 10.1 years ago by • 0
3
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5
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2.6k
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How to handle mix of samples from the same subject and from different subjects during differential expression analysis of RNA-seq using GLMs?
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updated 10.1 years ago by ★ 7.9k • written 10.1 years ago by ▴ 70
0
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1
reply
1.5k
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SomaticSignatures: extract low level information
somaticsignatures somaticsignatures mutationcontext
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by • 0
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0
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Job: Graduate Student in Cancer Genomics / Machine Learning Brigham Young University
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10.1 years ago Stephen Piccolo ▴ 600
0
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2.1k
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RMA and ComBat for 2 batches with samples in common
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updated 10.1 years ago by ▴ 650 • written 10.1 years ago by • 0
1
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7
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Extracting CNV data from CNVDetectionResult
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updated 10.1 years ago by ▴ 540 • written 10.5 years ago by • 0
4
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1
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2.7k
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Meta-analysis of gene expression data by 'MetaDE'
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updated 10.1 years ago by ▴ 150 • written 10.4 years ago by ▴ 260
0
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0
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oncoPrint ComplexHeatmap Error
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10.1 years ago Mandy • 0
2
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4
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2.3k
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edgeR: squeezeVar in EstimateDisp vs glmQLFit
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10.1 years ago veronique.storme • 0
0
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4
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1.9k
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Using iterators and foreach with doMC, using DNAStringSets
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10.1 years ago ben.ward ▴ 30
1
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2
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1.4k
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Feasibility of adapting iRanges to count concomittant drug therapy
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updated 10.1 years ago by ★ 13k • written 10.1 years ago by • 0
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3
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2.2k
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Trouble Downloading "ggbio"
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10.1 years ago ebkenn07 • 0
0
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5
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2.7k
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log plot density how to graph (error)
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10.1 years ago anu.kour • 0
0
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0
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Job: Post Doc (m/f) – Computational Biology - Boehringer Ingelheim
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10.1 years ago holger.klein • 0
0
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2
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1.8k
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stackStringsFromBam with paired-end reads
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updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 90
2
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4
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2.5k
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RUVseq design matrix for first pass of edger
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written 10.1 years ago by ▴ 80
5
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14
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Connection Refused on port 9000 - RCytoscape
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updated 10.1 years ago by ★ 8.2k • written 10.1 years ago by ▴ 50
3
votes
8
replies
3.2k
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Error aroma.affymetrix [affxparser Fusion SDK exception]
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updated 10.1 years ago by ★ 2.4k • written 10.1 years ago by ▴ 40
46,711 results • Page 421 of 935
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Answer: Where do the filename come from in the LOLA datasets?
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