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0
votes
0
replies
2.0k
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ChAMP: Error using champ.norm() function
ChAMP
methylation
epigenetics
10.3 years ago
jdangelo
• 0
5
votes
2
replies
1.2k
views
Interpreting Contrast Comparisons in edgeR
edger
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
ciera.martinez
• 0
3
votes
7
replies
3.3k
views
normalized data by DESeq2 look suspicious
deseq2
updated 10.3 years ago by
Ryan C. Thompson
★ 7.9k • written 10.3 years ago by
tonja.r
▴ 80
1
vote
0
replies
1.8k
views
enrichment analysis for gene pairs
go
gostats
category
gsea
10.3 years ago
Hector Corrada Bravo
▴ 60
0
votes
1
reply
1.4k
views
Distance measure used by snpgdsPCA in SNPRelate
snp
clustering
10.3 years ago
mattcott
• 0
8
votes
4
replies
3.4k
views
DESeq2 rlog error
DESeq2
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
bruce.moran
▴ 30
0
votes
0
replies
2.0k
views
Problem installing latest Bioconductor version
biocinstaller
software error
10.3 years ago
vassily
• 0
1
vote
1
reply
1.8k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 10.3 years ago by
andrew.j.skelton73
▴ 370 • written 10.3 years ago by
stuti.agrawal
• 0
2
votes
4
replies
3.2k
views
edgeR in R 3.2.2
edgeR
updated 10.3 years ago by
Gordon Smyth
53k • written 10.3 years ago by
glorobame
• 0
1
vote
13
replies
3.5k
views
Rsamtools memory leak
rsamtools
scanbam
bam
granges
iranges
10.3 years ago
mhills
▴ 10
0
votes
0
replies
2.0k
views
Job:
Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics
bioinformatician job
data visualization
Job
10.3 years ago
Doe, Aimee
▴ 40
3
votes
2
replies
2.0k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 10.3 years ago by
Aaron Lun
★ 29k • written 10.3 years ago by
Arne Muller
▴ 20
2
votes
2
replies
1.8k
views
a filter works alone but not with other filters
variantannotation
vcf
filtervcf
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
TimothéeFlutre
▴ 80
10
votes
6
replies
12k
views
Estimating and removing batch effects from rna-seq dataset
sva
batch effect
rnaseq
removebatcheffect()
limma
updated 10.3 years ago by
Jeff Leek
▴ 650 • written 10.3 years ago by
AB
▴ 110
4
votes
6
replies
3.6k
views
Deseq2 results discrepancies because of versions of R
deseq2
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
genomica
• 0
1
vote
2
replies
3.2k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 10.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.3 years ago by
enricoferrero
▴ 680
0
votes
0
replies
2.2k
views
Job:
Data scientist/bioinformatician - Paris
Genomics
metabolomics
biostatistics
data integration
Job
10.3 years ago
David Enot
▴ 30
5
votes
2
replies
1.6k
views
filter "isSnp" for VCF
variantannotation
filtervcf
vcf
updated 10.3 years ago by
Michael Lawrence
★ 11k • written 10.3 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.9k
views
Csaw : filter windows based on matched negative control
csaw
differential binding analysis
10.3 years ago
Pierre-François Roux
• 0
1
vote
1
reply
2.2k
views
RnBeads - doesn't produce pdfs
rnbeads
illumina450k
updated 10.3 years ago by
pavlo.lutsik
▴ 10 • written 10.3 years ago by
Brian Smith
▴ 120
0
votes
0
replies
1.2k
views
Gviz: BiomartGeneRegionTrack filters for canonical transcripts
gviz
10.3 years ago
roll
• 0
1
vote
8
replies
2.6k
views
A very large number of diffential genes
deseq2
normalization
10.3 years ago
GFM
▴ 20
0
votes
3
replies
2.8k
views
What do ellipses in 'plotarrays' function represent (from made4)
made4
plotarrays
correspondence analysis
ellipse
updated 10.3 years ago by
Aedin Culhane
▴ 510 • written 10.6 years ago by
maartenvandijk
• 0
0
votes
1
reply
1.7k
views
Unable to load Bioconductor with R version 3.2.2
R
Bioconductor
software error
warning message
10.3 years ago
nmlee
• 0
0
votes
3
replies
2.0k
views
rtracklayer v1.30.0 can no longer import gff files
rtracklayer
import.gff3
bug
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
Jenny Drnevich
★ 2.0k
1
vote
3
replies
1.6k
views
error in loading Riboseq
software error
riboseqr
10.3 years ago
yyu
• 0
4
votes
6
replies
2.3k
views
GenomicRanges mapply to all combinations of GRangesList objects
genomicranges
mapply
grangeslist
10.3 years ago
francesca casalino
▴ 50
4
votes
10
replies
6.3k
views
Finding gene lengths of mm10 to calculate rpkm from count matrix of rna-seq dataset
rpkm
gene length
count matrix
edgeR
rsubread
10.3 years ago
AB
▴ 110
0
votes
0
replies
1.2k
views
iClusterPlus tunning and fit.single error
iCluster
software error
10.3 years ago
perdomos
• 0
0
votes
4
replies
3.0k
views
IlluminaHumanMethylation450k.db - error on trying to insall
IlluminaHumanMethylation450k.db
10.3 years ago
Brian Smith
▴ 120
0
votes
5
replies
3.1k
views
GAlignments and the query sequence (SEQ) field of BAM files
[galignments]
bam
10.3 years ago
Robert K. Bradley
▴ 40
1
vote
0
replies
1.5k
views
News:
Bug found and fixed in bumphunter's bootstrap method
bumphunter
News
10.3 years ago
rafa
▴ 60
1
vote
2
replies
2.5k
views
Problem when installing GenomicFeatures on GNU/Linux server
edger
genomicfeatures
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
JunLVI
▴ 40
1
vote
1
reply
1.1k
views
mean and standard deviation at each point value of a list of matrices
mean
standard deviation
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
vinod.acear
▴ 50
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.3 years ago by
kevin.rue
▴ 350 • written 10.3 years ago by
willj
▴ 30
2
votes
8
replies
3.5k
views
illuminaHumanv4.db : annotation source, and mapping to transcript names
microarray
annotation
illumina human ht-12 v4
10.3 years ago
VSM
▴ 120
4
votes
8
replies
2.4k
views
Combination of duplicateCorrelation with arrayWeights to increase power for DE detection in multilevel experiments
limma
duplicatecorrelation
arrayweights
microarray
updated 10.3 years ago by
Gordon Smyth
53k • written 10.3 years ago by
svlachavas
▴ 840
3
votes
1
reply
2.4k
views
Problems during the installation of IRanges
IRange
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
wuliang2
• 0
0
votes
3
replies
2.5k
views
estimateSizeFactors first or later?
estimatesizefactors
deseq2
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
Mehmet Ilyas Cosacak
• 0
0
votes
20
replies
3.4k
views
VariantAnnotation function getTranscriptSeqs() gives error "object '.makeUCSCTxListFromGRangesList' not found"
variantannotation
10.5 years ago • updated 10.3 years ago
Tjeerd Dijkstra
• 0
2
votes
6
replies
1.9k
views
Limma; design matrix for treatments and sibship
limma
design and contrast matrix
10.3 years ago
John
▴ 10
3
votes
4
replies
1.7k
views
Errors in makeOrgPackage
annotation
error
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
knishida
▴ 20
0
votes
1
reply
1.2k
views
DESeq2 Contrast and Design Matrix Question: 4 Experimental Factors
deseq2
rnaseq
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
erin.gill81
▴ 60
2
votes
5
replies
2.0k
views
runing NetBenchmark on my own datasets
software error
network
updated 10.3 years ago by
pau.bellot
▴ 20 • written 10.3 years ago by
Angel
▴ 40
0
votes
2
replies
2.0k
views
Annotation within ChIPSeeker mismatch geneId and annotation column
ChIPseeker
10.3 years ago
n.kreim
▴ 20
3
votes
10
replies
5.9k
views
ChIPseeker question: enrichPeakOverlap to find enrichment of genomic annotations in peaks from GRanges
chipseeker
updated 10.3 years ago by
Guangchuang Yu
★ 1.2k • written 10.3 years ago by
francesca casalino
▴ 50
3
votes
6
replies
2.4k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.3 years ago by
kevin.rue
▴ 350 • written 10.3 years ago by
kcamnairb
▴ 10
5
votes
8
replies
5.2k
views
EdgeR - RNA-Seq time course analysis - Testing main and interaction effects and Post hoc Test
edger
edgeR main and interaction effects
edgeR post hoc test
updated 10.3 years ago by
Gordon Smyth
53k • written 10.3 years ago by
padmaswami15
• 0
3
votes
4
replies
1.7k
views
limma design matrix question
limma
design and contrast matrix
limma design matrix
updated 10.3 years ago by
Aaron Lun
★ 29k • written 10.3 years ago by
akridgerunner
▴ 30
0
votes
5
replies
3.7k
views
Gene Symbol with Pathview
pathview
bioconductor
kegg
visualization
updated 10.3 years ago by
Luo Weijun
★ 1.6k • written 10.3 years ago by
abhinavbn
• 0
46,730 results • Page
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