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error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
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overlapsAny for elements in GRangesList
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ASpli checks fail on Linux due to missing dependency to statmod
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What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
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9 months ago Jitendra ▴ 10
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updated 7 months ago by 16k • written 7 months ago by ★ 1.5k
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Archive location for Bioconductor packages
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
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updated 10 months ago by 65k • written 6.8 years ago by ▴ 10
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PhD student
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Light difference when using coef vs omit a group when compare 3 groups.
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4 weeks ago • updated 27 days ago Chris ▴ 10
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should statmod be a dependency of limma and not a suggests?
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updated 9 months ago by 50k • written 8.0 years ago by • 0
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
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updated 8 weeks ago by • 0 • written 13 months ago by ▴ 10
1,000 results • Page 2 of 20
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Replies
Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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