4
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9
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4.4k
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How to get DESeq2 sizefactors from data imported using tximport
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updated 11 months ago by • 0 • written 6.9 years ago by • 0
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701
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9
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updated 7 months ago by ▴ 10 • written 22 months ago by ▴ 10
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9
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588
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limma fo continous variables
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4 months ago Luca • 0
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10 months ago Ndimensional ▴ 20
2
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updated 6 months ago by • 0 • written 20 months ago by ▴ 20
4
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212
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Can DESeq2 rlog normalized matrix reflects time course result directly?
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updated 17 hours ago by ★ 4.1k • written 1 day ago by • 0
0
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9
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860
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How long does it usually take to complete dream() from start to finish?
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8 months ago hayleyw • 0
0
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9
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clarification about bumphunter value output
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updated 11 months ago by • 0 • written 6.2 years ago by • 0
1
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9
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906
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DESeq2 not replicable results
RNASeqData DESeq2
updated 10 months ago by 42k • written 10 months ago by • 0
2
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9
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423
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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updated 21 days ago by 65k • written 21 days ago by • 0
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8
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Problem about picking soft threshold power in WGCNA software
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8
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Downloading package mixOmics
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2
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written 21 months ago by ▴ 10
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Deseq2 Results are different using batch design
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9 months ago hemantcnaik • 0
2
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8
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Failure of beta estimates to converge in DESeq2 despite noncollinearity and reasonable counts
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11 months ago Ndimensional ▴ 20
1
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8
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2.8k
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Significantly regulated genes produced by only a few affected samples
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Support of parquet files for on-disk Bioconductor objects
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8 months ago sandmann.t ▴ 70
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8
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Quickly calculating adjusted Fold Change with DESeq2
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6 months ago Luca • 0
5
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Limma design with continuous and categorical covariates
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updated 23 days ago by • 0 • written 7.8 years ago by ▴ 30
2
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 4 months ago by • 0 • written 16 months ago by • 0
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CAGEr bug report: wrong consensus cluster results
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updated 10 months ago by ▴ 180 • written 17 months ago by ▴ 30
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8
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DESeq2 test for synergistic vs additive effects
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updated 6 weeks ago by ★ 13k • written 10 months ago by ▴ 10
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Can I trust the differential expression analysis when the two groups overlap on the PCA?
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0
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8
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Bioconductor version cannot be validated
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10
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8
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conumee error: query intensities not given for all probes.
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8
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753
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11 months ago Habil Zare ▴ 200
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flowset/ncdfFlowset replace keywords doesn't work right
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How to remove X & Y chromosome genes from RNAseq data
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3
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5
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8
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Can the limma package be applied to Log2 RUV-normalized data?
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updated 5 months ago by • 0 • written 11 months ago by ▴ 10
8
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8
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Steps needed to change design (relevel factors) in DESeq2
deseq2 DESeq2
updated 7 months ago by • 0 • written 4.8 years ago by ▴ 40
3
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8
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Constrast for Time Course Experiments using Limma
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10 weeks ago dl17032000 • 0
0
votes
8
replies
379
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DESeq2 output used for PCA plot on R studio
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updated 22 days ago by ★ 1.4k • written 23 days ago by • 0
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8
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Can we use rlog or vst data values in limma for differential expression analysis?
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updated 11 months ago by 50k • written 17 months ago by ▴ 20
2
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8
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Error in DGEList(counts = cnt, group = group) : non-numeric values found in counts
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13 months ago • updated 11 months ago Luis • 0
1
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8
replies
570
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edgeR error "Design matrix not of full rank"
edgeR methylation
updated 3 months ago by 50k • written 3 months ago by • 0
0
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8
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fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 6 months ago by • 0 • written 14 months ago by • 0
0
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8
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Question about filterByExpr function edgeR
edgeR
9 months ago • updated 8 months ago lucap • 0
0
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8
replies
448
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DESeq and SVA for batch effect
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10 weeks ago michelafrancesconi8 • 0
1
vote
8
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Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
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written 11 months ago by • 0
0
votes
7
replies
1.7k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
7
replies
484
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error in reading idat files and creating rgset
minfi MethylationArray
updated 3 months ago by 65k • written 3 months ago by • 0
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