Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
3
replies
329
views
Statistical test
NewWave
written 4 months ago by
mario
• 0
1
vote
5
replies
351
views
fgsea fork
fgsea
updated 5 weeks ago by
James W. MacDonald
65k • written 5 weeks ago by
yimjohns
• 0
0
votes
0
replies
115
views
How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
5 weeks ago
feather-W
• 0
0
votes
0
replies
111
views
PCA plot for normalized counts using Diffbind
DiffBind
PCAplot
5 weeks ago
Ankit
▴ 20
0
votes
0
replies
100
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind
ATACSeq
5 weeks ago
Pierre Lindenbaum
▴ 10
1
vote
3
replies
282
views
miRTarRnaseq library
miRNATarget
mirTarRnaSeq
updated 5 weeks ago by
mercedeh.movassagh
▴ 10 • written 6 weeks ago by
María
• 0
0
votes
1
reply
197
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 5 weeks ago by
Guido Hooiveld
★ 3.9k • written 7 weeks ago by
Julie
• 0
1
vote
1
reply
264
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 6 weeks ago by
SamGG
▴ 350 • written 11 weeks ago by
jarod
▴ 30
3
votes
3
replies
405
views
Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
scater
runPCA
updated 6 weeks ago by
alan.ocallaghan
▴ 160 • written 6 weeks ago by
Najla Abassi
• 0
0
votes
2
replies
572
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 6 weeks ago by
CHEN
• 0 • written 11 months ago by
Saanchi
• 0
0
votes
0
replies
125
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals
GenomicRanges
6 weeks ago
gshweta95
• 0
2
votes
1
reply
214
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 6 weeks ago by
Guido Hooiveld
★ 3.9k • written 6 weeks ago by
enee
▴ 10
0
votes
2
replies
258
views
Error in msaFun Cannot open input file. No alignment!
msa
written 7 weeks ago by
Kamil Slowikowski
▴ 30
0
votes
0
replies
117
views
Can i retrieve domain information from PANTHER ID's using PANTHER.db ?
PANTHER.db
6 weeks ago
nromerov
• 0
1
vote
3
replies
262
views
cBioPortalData loads empty z-score expression table
cBioPortalData
updated 6 weeks ago by
Marcel Ramos
690 • written 6 weeks ago by
Astrid Deschênes
• 0
1
vote
4
replies
296
views
EDAseq to normalise for both gene-length and GC-content
norma
EDASeq
EDA
Normalization
6 weeks ago
samuel.channon
• 0
0
votes
0
replies
132
views
crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray
cdf
crlmm
6 weeks ago
mayra.haedo
• 0
0
votes
0
replies
115
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry
flowWorkspace
flowCore
6 weeks ago
taylor.witte
• 0
0
votes
0
replies
141
views
Multifactor analysis in DiffBind
DiffBind
multifactoranalysis
6 weeks ago
erbrocato
• 0
1
vote
2
replies
292
views
Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 6 weeks ago by
ATpoint
★ 4.1k • written 6 weeks ago by
maximilian.beikirch
• 0
0
votes
2
replies
201
views
Visium RNA
metaMSdata
updated 6 weeks ago by
vvvc360work2
• 0 • written 6 weeks ago by
Karlison
• 0
0
votes
0
replies
117
views
DNAcopy segment function not reproducible even when setting seed
DNAcopy
6 weeks ago
BID
• 0
0
votes
0
replies
154
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
9 weeks ago • updated 7 weeks ago
Giovanni Calice
▴ 160
1
vote
2
replies
720
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 10 months ago by
malat1_t
▴ 10
0
votes
1
reply
1.1k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST
AIC calcuation
Parameters
single cell
hurdle model
updated 7 weeks ago by
rproendo
▴ 20 • written 5.2 years ago by
mcalgaro93
• 0
0
votes
1
reply
180
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 7 weeks ago by
Simon Pearce
• 0 • written 3 months ago by
User3088
• 0
0
votes
1
reply
185
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 7 weeks ago by
Gordon Smyth
50k • written 7 weeks ago by
Gerhard Thallinger
▴ 180
0
votes
1
reply
200
views
Exact same results in Diffbind with different normalization methods
DiffBind
8 weeks ago • updated 7 weeks ago
red_bricks
▴ 50
3
votes
1
reply
1.8k
views
TwoSampleMR and ieugwasr
ieugwasr
clumping
TwoSampleMR
updated 7 weeks ago by
zoheir.alayash
▴ 10 • written 2.1 years ago by
S T
▴ 90
0
votes
1
reply
682
views
gwas power calculation for quantitative traits
power
GWAS
written 2.7 years ago by
rajya82
• 0
0
votes
2
replies
253
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
7 weeks ago
Sam
▴ 10
0
votes
1
reply
234
views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks
TCGA
clinical
TCGA-BRCA
written 8 weeks ago by
BioinfoMug
• 0
0
votes
0
replies
134
views
FELLA plotGraph function won't change the legend
FELLA
8 weeks ago
yuhang
• 0
0
votes
0
replies
151
views
medips-output
ngsReports
MEDIPS
8 weeks ago
subhiksha
• 0
0
votes
0
replies
141
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas
db0
8 weeks ago
bocsci11
• 0
0
votes
0
replies
115
views
The graphical interface of FELLA doesn't work
FELLA
8 weeks ago
yuhang
• 0
0
votes
0
replies
136
views
DEXSeq plot error
DEXSeq
DEXSeqNAvalues
DEXseq
8 weeks ago
jean-christophe.helbling
• 0
0
votes
6
replies
735
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 8 weeks ago by
qianyi13
• 0 • written 10 weeks ago by
Pavel
• 0
0
votes
1
reply
221
views
Rcpp compilation error
Release
Rcpp
updated 8 weeks ago by
ATpoint
★ 4.1k • written 8 weeks ago by
Robert K. Bradley
▴ 40
0
votes
0
replies
156
views
To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
8 weeks ago
Henry
• 0
0
votes
0
replies
176
views
Rain error: invalid annotation of time points
rain
8 weeks ago
mpuli011
• 0
0
votes
0
replies
194
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
8 weeks ago
Felix
• 0
0
votes
1
reply
979
views
ConsensusClusterPlus without figures
clustering
updated 8 weeks ago by
fatmaserrt
• 0 • written 6.5 years ago by
jasonji_19950808
• 0
0
votes
0
replies
211
views
Error: grouping factors must have > 1 sampled level
Mast
mastR
MAST
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
Andrew
• 0
0
votes
0
replies
148
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts
Rsubread
9 weeks ago
chris2.a.white
• 0
1
vote
1
reply
394
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 9 weeks ago by
Yang Liao
▴ 380 • written 3 months ago by
Joe Marturano
▴ 10
0
votes
1
reply
885
views
WGCNA soft thresholding suggesting a power of 1
independence
thresholding
WGCNA
connectivity
scale
updated 9 weeks ago by
boczniak767
▴ 720 • written 15 months ago by
Kim
• 0
0
votes
0
replies
166
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
9 weeks ago
jk
• 0
0
votes
0
replies
153
views
Can I combine collinear variables into a single value
BatchEffect
limma
9 weeks ago
Harrsha
• 0
0
votes
0
replies
238
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
9 weeks ago
vipul14
• 0
1,000 results • Page
2 of 20
Recent ...
Replies
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Answer: Recovering my account credentials on Bioconductor
by
shepherl
3.9k
As we will need to exchange some information can you please contact me at bioconductorcoreteam@gmail.com and I can better assist you. Che…
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Popular Question
to
Malcolm Cook
★ 1.6k
Popular Question
to
priyanka.m
• 0
Locations
• All
UPF, Barcelona, Spain,
2 minutes ago
United States,
2 minutes ago
United Kingdom,
12 minutes ago
France,
12 minutes ago
Sweden,
18 minutes ago
Traffic: 802 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6