Showing : Annotation • reset
0
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3
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8.1k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 14 days ago by • 0 • written 23 months ago by • 0
0
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5
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2.3k
views
Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
written 9.0 years ago by • 0
1
vote
2
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1.0k
views
Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 4 months ago by 68k • written 4 months ago by • 0
1
vote
1
reply
355
views
Merging annotation with differential expression output
annotation RNASeqData
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
2
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530
views
Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
4 months ago GA ▴ 10
1
vote
2
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1.8k
views
help documentation for keytypes in annotationdbi packages
annotation
updated 5 months ago by ▴ 10 • written 4.8 years ago by • 0
0
votes
0
replies
255
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
6 months ago Muhammad • 0
0
votes
1
reply
294
views
affymetrix
genomes Annotation
updated 6 months ago by 68k • written 6 months ago by • 0
5
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13
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2.2k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
10 months ago • updated 9 months ago KABILAN • 0
0
votes
1
reply
462
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 10 months ago by 68k • written 10 months ago by • 0
0
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0
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563
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
11 months ago Aleena_Ensembl ▴ 30
1
vote
2
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1.1k
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
13 months ago ronin • 0
2
votes
2
replies
1.0k
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
15 months ago pcantalupo ▴ 10
1
vote
6
replies
1.5k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 16 months ago by ▴ 230 • written 16 months ago by • 0
2
votes
2
replies
1.3k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 17 months ago by ▴ 10
0
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0
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735
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
18 months ago nilanjanamani88 • 0
0
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5
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2.6k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.6 years ago by ★ 13k
5
votes
11
replies
5.1k
views
How to annotate gene names for genomic coordinates?
annotation
written 10.2 years ago by • 0
0
votes
1
reply
1.0k
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
1
vote
0
replies
1.4k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
23 months ago kayla.interdonato ▴ 160
3
votes
4
replies
1.2k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
2
votes
4
replies
1.8k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
2.2 years ago RuBBiT0 ▴ 10
0
votes
2
replies
1.6k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
4
replies
1.9k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.3 years ago Michael Steinbaugh ▴ 90
0
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0
replies
1.0k
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.4 years ago ahiser • 0
0
votes
3
replies
1.3k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.4 years ago christian.dina • 0
0
votes
0
replies
1.2k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.4 years ago kayla.interdonato ▴ 160
2
votes
1
reply
924
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
1
reply
1.4k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.5 years ago by 68k • written 2.5 years ago by ▴ 50
3
votes
3
replies
2.0k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.5 years ago by ★ 4.1k • written 2.5 years ago by ▴ 10
0
votes
1
reply
887
views
Bioconductor tool for curating annotations?
Annotation
updated 2.5 years ago by ▴ 760 • written 2.6 years ago by ▴ 180
3
votes
2
replies
3.4k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.6 years ago • updated 2.5 years ago m-bihie ▴ 10
1
vote
9
replies
2.2k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
0
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3
replies
1.4k
views
A look inside annotation packages
Annotation
2.7 years ago Ed Siefker ▴ 230
3
votes
2
replies
8.6k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.7 years ago by ▴ 200 • written 7.7 years ago by • 0
2
votes
3
replies
2.8k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 10
0
votes
5
replies
3.3k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.8 years ago by ★ 4.1k • written 2.9 years ago by ▴ 30
0
votes
0
replies
1.2k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.9 years ago kayla.interdonato ▴ 160
0
votes
1
reply
889
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
1
vote
3
replies
3.1k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.1 years ago by 68k • written 3.2 years ago by ▴ 60
0
votes
1
reply
1.4k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.4 years ago • updated 3.3 years ago kayla.interdonato ▴ 160
0
votes
0
replies
964
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.4 years ago Ava • 0
0
votes
1
reply
1.3k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.3 years ago by ▴ 70 • written 3.4 years ago by ▴ 670
0
votes
0
replies
1.1k
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.6 years ago Amandeep • 0
0
votes
1
reply
1.7k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.6 years ago by ▴ 890 • written 3.7 years ago by • 0
0
votes
1
reply
2.0k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.6 years ago by 4.2k • written 3.6 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.7 years ago Ahdee ▴ 60
0
votes
2
replies
3.3k
views
getBM error in the biomaRt R package
Annotation
updated 3.0 years ago by • 0 • written 3.7 years ago by • 0
0
votes
1
reply
1.4k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.7 years ago by • 0
0
votes
0
replies
1.3k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.8 years ago Shane • 0
1,978 results • Page 1 of 40
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Comment: p-adjusted values in multiple comparisons by Gordon Smyth 52k
plotMDS() is best run on the original DGEList object, i.e., on the input to voom rather than on the output. See the example analyses in the…
Comment: EuroBioC2024 abstract submission is open! by rajilrfaze • 0
[Sportzfy smooth streaming APK][1] ensures zero buffering during your favorite games. [1]: https://sportzfytvapk.com.co/
Comment: p-adjusted values in multiple comparisons by ocanorocabayera • 0
Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…
Comment: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k
Not sure what "points" you are referring to, or what you mean by them being "weighted".
Answer: p-adjusted values in multiple comparisons by Gordon Smyth 52k
If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…
Votes
Answer: p-adjusted values in multiple comparisons
Comment: Very different log2 Fold changes with DESeq2 and explict calculation
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
Answer: Very different log2 Fold changes with DESeq2 and explict calculation
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