Showing : Annotation • reset
0
votes
4
replies
8.8k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
written 2.2 years ago by • 0
0
votes
5
replies
2.4k
views
Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
written 9.3 years ago by • 0
1
vote
2
replies
1.1k
views
Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 7 months ago by 68k • written 7 months ago by • 0
1
vote
1
reply
419
views
Merging annotation with differential expression output
annotation RNASeqData
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
2
replies
627
views
Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
7 months ago GA ▴ 10
1
vote
2
replies
1.9k
views
help documentation for keytypes in annotationdbi packages
annotation
updated 8 months ago by ▴ 10 • written 5.1 years ago by • 0
0
votes
0
replies
398
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
9 months ago Muhammad • 0
0
votes
1
reply
443
views
affymetrix
genomes Annotation
updated 10 months ago by 68k • written 10 months ago by • 0
5
votes
13
replies
2.4k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
13 months ago KABILAN • 0
0
votes
1
reply
555
views
how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
0
replies
650
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
14 months ago Aleena_Ensembl ▴ 30
1
vote
2
replies
1.2k
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
16 months ago ronin • 0
2
votes
2
replies
1.2k
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
18 months ago pcantalupo ▴ 10
1
vote
6
replies
1.7k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 19 months ago by ▴ 230 • written 19 months ago by • 0
2
votes
2
replies
1.4k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 20 months ago by ▴ 10
0
votes
0
replies
797
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
21 months ago nilanjanamani88 • 0
0
votes
5
replies
2.7k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.9 years ago by ★ 13k
5
votes
11
replies
5.3k
views
How to annotate gene names for genomic coordinates?
annotation
written 10.4 years ago by • 0
0
votes
1
reply
1.1k
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
1
vote
0
replies
1.6k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
2.2 years ago kayla.interdonato ▴ 160
3
votes
4
replies
1.3k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
2
votes
4
replies
1.9k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
2.5 years ago RuBBiT0 ▴ 10
0
votes
2
replies
1.7k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
4
replies
2.0k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
2.5 years ago Michael Steinbaugh ▴ 90
0
votes
0
replies
1.2k
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.6 years ago ahiser • 0
0
votes
3
replies
1.3k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.6 years ago christian.dina • 0
0
votes
0
replies
1.3k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.7 years ago kayla.interdonato ▴ 160
2
votes
1
reply
1.0k
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
1
reply
1.5k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 50
3
votes
3
replies
2.1k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by ▴ 10
0
votes
1
reply
937
views
Bioconductor tool for curating annotations?
Annotation
updated 2.8 years ago by ▴ 760 • written 2.8 years ago by ▴ 180
3
votes
2
replies
3.5k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.8 years ago m-bihie ▴ 10
1
vote
9
replies
2.3k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
3
replies
1.5k
views
A look inside annotation packages
Annotation
2.9 years ago Ed Siefker ▴ 230
3
votes
2
replies
8.9k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.9 years ago by ▴ 200 • written 7.9 years ago by • 0
2
votes
3
replies
3.0k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.8 years ago by • 0 • written 3.0 years ago by ▴ 10
0
votes
5
replies
3.4k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by ▴ 30
0
votes
0
replies
1.3k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
3.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
946
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
1
vote
3
replies
3.2k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 60
0
votes
1
reply
1.5k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.6 years ago kayla.interdonato ▴ 160
0
votes
0
replies
1.0k
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.6 years ago Ava • 0
0
votes
1
reply
1.4k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.6 years ago by ▴ 70 • written 3.7 years ago by ▴ 670
0
votes
0
replies
1.1k
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.8 years ago Amandeep • 0
0
votes
1
reply
1.9k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.8 years ago by ▴ 890 • written 4.0 years ago by • 0
0
votes
1
reply
2.1k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.9 years ago by 4.2k • written 3.9 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.9 years ago Ahdee ▴ 60
0
votes
2
replies
3.4k
views
getBM error in the biomaRt R package
Annotation
updated 3.3 years ago by • 0 • written 4.0 years ago by • 0
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.0 years ago by • 0
0
votes
0
replies
1.3k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
4.0 years ago Shane • 0
1,978 results • Page 1 of 40
Recent ...
Replies
Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips? by Stephen Piccolo ▴ 600
Thank you!
Answer: Alternative to BrainArray custom CDF packages for Affymetrix chips? by Guido Hooiveld ★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbni.…
Comment: Getting a large intercept with DESeq2 by Denise • 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo by shepherl 4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer by shepherl 4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Awards • All
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Scholar to Gordon Smyth 53k
Popular Question to James W. MacDonald 68k
Popular Question to anjanaram1 ▴ 10
Locations • All
Wageningen University, Wageningen, the Netherlands, just now
United States, 1 minute ago
United States, 23 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 723 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6