Showing : Annotation • reset
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affymetrix
genomes Annotation
updated 7 days ago by 67k • written 8 days ago by • 0
5
votes
13
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1.7k
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Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
3 months ago KABILAN • 0
0
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1
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272
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how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 3 months ago by 67k • written 3 months ago by • 0
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0
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344
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
5 months ago Aleena ▴ 30
1
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2
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877
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Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
7 months ago ronin • 0
2
votes
2
replies
651
views
Get gene symbols for a set of hg19 coordinates
annotation hg19
8 months ago pcantalupo ▴ 10
1
vote
6
replies
1.1k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 9 months ago by ▴ 200 • written 10 months ago by • 0
2
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2
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870
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 10 months ago by ▴ 10
0
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0
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528
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
11 months ago nilanjanamani88 • 0
0
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5
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2.3k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.1 years ago by ★ 13k
5
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11
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4.8k
views
How to annotate gene names for genomic coordinates?
annotation
written 9.6 years ago by • 0
0
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1
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813
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 16 months ago by ▴ 780 • written 16 months ago by • 0
1
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0
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1.1k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
16 months ago kayla.interdonato ▴ 160
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1
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6.3k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 16 months ago by 67k • written 16 months ago by • 0
3
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4
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1.0k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 18 months ago by 67k • written 18 months ago by • 0
2
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4
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1.5k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
20 months ago RuBBiT0 ▴ 10
0
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2
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1.3k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 20 months ago by 67k • written 20 months ago by • 0
0
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4
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1.6k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
20 months ago Michael Steinbaugh ▴ 90
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0
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831
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
22 months ago ahiser • 0
0
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3
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1.0k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
22 months ago christian.dina • 0
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0
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1.0k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
22 months ago kayla.interdonato ▴ 160
2
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1
reply
748
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 24 months ago by 67k • written 24 months ago by • 0
0
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1
reply
1.2k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 24 months ago by 67k • written 24 months ago by ▴ 50
3
votes
3
replies
1.6k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 24 months ago by ★ 4.1k • written 24 months ago by ▴ 10
0
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1
reply
741
views
Bioconductor tool for curating annotations?
Annotation
updated 24 months ago by ▴ 760 • written 24 months ago by ▴ 180
3
votes
2
replies
2.9k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.0 years ago • updated 24 months ago m-bihie ▴ 10
1
vote
9
replies
1.8k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.0 years ago by 67k • written 2.0 years ago by • 0
0
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3
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1.2k
views
A look inside annotation packages
Annotation
2.1 years ago Ed Siefker ▴ 230
3
votes
2
replies
7.6k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.1 years ago by ▴ 200 • written 7.1 years ago by • 0
2
votes
3
replies
2.4k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.0 years ago by • 0 • written 2.2 years ago by ▴ 10
0
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5
replies
2.8k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by ▴ 30
0
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0
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1.1k
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.3 years ago kayla.interdonato ▴ 160
0
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1
reply
776
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
1
vote
3
replies
2.5k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.6 years ago by 67k • written 2.6 years ago by ▴ 60
0
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1
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1.2k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.8 years ago kayla.interdonato ▴ 160
0
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0
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821
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.8 years ago Ava • 0
0
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1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.8 years ago by ▴ 70 • written 2.9 years ago by ▴ 670
0
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0
replies
926
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.0 years ago Amandeep • 0
0
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1
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1.5k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.0 years ago by ▴ 890 • written 3.2 years ago by • 0
0
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1
reply
1.7k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.0 years ago by 4.1k • written 3.0 years ago by ▴ 20
0
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0
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895
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.1 years ago Ahdee ▴ 50
0
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2
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2.8k
views
getBM error in the biomaRt R package
Annotation
updated 2.5 years ago by • 0 • written 3.2 years ago by • 0
0
votes
1
reply
1.3k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.2 years ago by • 0
0
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0
replies
1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.2 years ago Shane • 0
0
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1
reply
1.1k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
1
reply
1.8k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3.3 years ago by ★ 4.0k • written 5.5 years ago by ▴ 20
0
votes
1
reply
879
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 3.4 years ago by 4.1k • written 3.4 years ago by • 0
3
votes
1
reply
2.7k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.4 years ago by 67k • written 3.4 years ago by • 0
1
vote
1
reply
2.8k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 3.4 years ago by ▴ 290 • written 3.4 years ago by ▴ 10
1
vote
2
replies
3.3k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 3.5 years ago by 67k • written 3.5 years ago by • 0
50 results • Page 1 of 1
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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…
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Bioconductor Course, Kenya 2025: Applications Open!
Comment: can't install tscR
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
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