Showing : BioCManager • reset
0
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310
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News: CRAN downtime
BiocManager Bioconductor
6 months ago shepherl 3.9k
5
votes
2
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914
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
9 months ago Alessia ▴ 40
3
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5
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1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 10 months ago by 6.7k • written 10 months ago by ▴ 20
0
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4
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922
views
Unable to install BiocManager
Biocmanager R
updated 13 months ago by ▴ 50 • written 13 months ago by • 0
0
votes
2
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3.3k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 17 months ago by 65k • written 17 months ago by • 0
0
votes
2
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765
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 17 months ago by • 0
2
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4
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2.2k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
1
vote
3
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5.5k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 16 months ago by 3.9k • written 18 months ago by • 0
0
votes
3
replies
1.2k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 18 months ago by 6.7k • written 18 months ago by • 0
0
votes
4
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841
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 18 months ago by ★ 4.0k • written 18 months ago by • 0
0
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1
reply
2.9k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 19 months ago by 3.9k • written 19 months ago by • 0
0
votes
1
reply
664
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 22 months ago by ▴ 780 • written 22 months ago by • 0
4
votes
13
replies
3.8k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 16 months ago by ★ 5.2k • written 23 months ago by • 0
2
votes
1
reply
4.0k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 23 months ago by 700 • written 23 months ago by ▴ 10
1
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5
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1.5k
views
EBImage installation problem
BiocManager
updated 2.0 years ago by 6.7k • written 2.0 years ago by • 0
0
votes
3
replies
3.7k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.0 years ago Olivia • 0
1
vote
6
replies
1.7k
views
Problems installing BiocManager
BiocManager
2.1 years ago ksci ▴ 20
0
votes
2
replies
2.1k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
votes
2
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1.3k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
2.3 years ago f1014063507 • 0
0
votes
8
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8.7k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 700 • written 2.8 years ago by ▴ 10
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 3.0 years ago by • 0
0
votes
1
reply
1.2k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
6
votes
6
replies
6.8k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 2.8 years ago by • 0 • written 3.0 years ago by 6.7k
12
votes
33
replies
29k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.1 years ago by 65k • written 3.0 years ago by ▴ 60
0
votes
2
replies
900
views
I cannot install the splatter on colab
splatter biocmanager
written 3.2 years ago by • 0
0
votes
1
reply
2.1k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 10
1
vote
3
replies
1.2k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
3.3 years ago adklts • 0
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 3.5 years ago by 25k • written 3.6 years ago by ▴ 90
1
vote
6
replies
3.1k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
2
votes
3
replies
1.9k
views
Unable to install BiocManager
BiocManager
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 10
0
votes
1
reply
1.7k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 3.8 years ago by ★ 3.9k • written 3.8 years ago by • 0
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
21
replies
5.2k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.0 years ago by ▴ 60
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
1.6k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
0
votes
3
replies
955
views
Installation path not writable
ebimage biocmanager
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
votes
5
replies
1.7k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
4.5 years ago wang.lingjue • 0
1
vote
3
replies
1.3k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.4k
0
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1
reply
2.3k
views
BiocManager upgrade problem
BiocManager
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
7
replies
3.3k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.6 years ago james.dalgleish ▴ 30
0
votes
1
reply
844
views
BiocManager::install() update change from biocLite()
BiocManager
4.6 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 20
4
votes
9
replies
2.4k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 10
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by • 0
0
votes
1
reply
2.5k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
4.9 years ago morlenrp • 0
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
9
votes
32
replies
6.2k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.0 years ago by 16k • written 5.1 years ago by • 0
0
votes
2
replies
2.8k
views
Problem installing scater
scater R biocmanager bioconductor
updated 5.4 years ago by ★ 28k • written 5.4 years ago by • 0
3
votes
4
replies
2.0k
views
Error: 'biocValid' is not an exported object from 'namespace:BiocManager'
biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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