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shepherl
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Recent ...
Replies
Comment: DESeq2 and shrinkage of log2 fold changes
by
Shannon
•
0
Hi Mike, would you mind clarifying where the lfcShrink is enabled "by default"? As you also mentioned above "The difference between results…
Comment: SeSAMe DMR for EPIC V2
by
zhouwanding
▴
10
My guess is that the input has a suffix-removed probe id for EPICv2 data. We will add a fix to that in the DMR function in a few days. But …
Comment: EnsDb: bad_weak_ptr
by
James W. MacDonald
66k
You cannot save and reuse an `EnsDb` object like that, as it's mostly just a pointer to a SQLite Db and functions to query it.
```
library…
Comment: EnsDb: bad_weak_ptr
by
shepherl
3.9k
It seems to be an issue with the saveRDS and readRDS and not the hubs
```
> aqh
EnsDb for Ensembl:
|Backend: SQLite
|Db type: EnsDb
|Type …
Comment: EnsDb: bad_weak_ptr
by
Lluís Revilla Sancho
▴
730
I am using saveRDS and readRDS because when executing this inside a quarto report it failed sometimes to connect to the remote server (befo…
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