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FASTA
•
reset
0
votes
16
replies
2.4k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
3.6 years ago
writetoroopali
• 0
8
votes
14
replies
7.9k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 5.0 years ago by
tongtong.wang1210
• 0 • written 5.3 years ago by
Olorin
▴ 50
5
votes
8
replies
1.4k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 3.3 years ago by
Martin Morgan
25k • written 3.3 years ago by
Konstantinos Yeles
▴ 70
0
votes
5
replies
772
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 5.6 years ago by
Michael Lawrence
11k • written 5.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
1.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
6.2 years ago
Henrik Bengtsson
★ 2.4k
2
votes
4
replies
1.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 6.9 years ago by
xiaojing.wang
▴ 50 • written 6.9 years ago by
kristenbeck527
• 0
0
votes
4
replies
730
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
9 months ago
HELEN
• 0
2
votes
4
replies
794
views
convert a sequence to Ranges object
iranges
fasta
split
updated 5.3 years ago by
Michael Lawrence
11k • written 5.3 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
3
replies
673
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 3.3 years ago by
Michael Lawrence
11k • written 3.3 years ago by
k.vitting.seerup
▴ 100
2
votes
3
replies
1.2k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 4.7 years ago by
James W. MacDonald
60k • written 4.7 years ago by
Glubbdrubb
• 0
4
votes
3
replies
2.5k
views
a package for read.fasta
seqinr
fasta
updated 6.8 years ago by
Hervé Pagès
15k • written 6.8 years ago by
Angel
▴ 40
2
votes
2
replies
1.2k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
7.5 years ago
b.stielow
• 0
0
votes
2
replies
2.6k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 3.3 years ago by
James W. MacDonald
60k • written 3.3 years ago by
christinafragel
• 0
1
vote
2
replies
1.3k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 5.4 years ago by
James W. MacDonald
60k • written 5.4 years ago by
fastabest
• 0
1
vote
2
replies
2.2k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
kevin.debray
• 0
0
votes
1
reply
264
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
24 months ago
joannew
• 0
0
votes
1
reply
1.1k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 6.4 years ago by
Hervé Pagès
15k • written 6.5 years ago by
giuliobarth
• 0
0
votes
1
reply
292
views
How to get similarity score between two genomes of different species
fasta
multi-species
19 months ago
drew.neely
• 0
2
votes
1
reply
1.1k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 6.1 years ago by
Jeff Johnston
▴ 90 • written 6.1 years ago by
TimothéeFlutre
▴ 80
0
votes
0
replies
138
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
6 months ago
HELEN
• 0
2
votes
0
replies
2.2k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
6.8 years ago
Sonali Arora
▴ 380
0
votes
0
replies
540
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
4.6 years ago
achaillon
• 0
0
votes
0
replies
743
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
402
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
3.5 years ago
A
▴ 40
0
votes
0
replies
237
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
20 months ago
dh.heredero
▴ 10
0
votes
0
replies
205
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
9 months ago
Endre Sebestyén
▴ 60
26 results • Page
1 of 1
Recent ...
Replies
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Jiping Wang
▴ 70
that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…
Answer: Help with constructing design matrix for edgeR/limma
by
Gordon Smyth
45k
If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…
Comment: edgeR : results from goana and kegga functions show opposite sig. p-value
by
sharvari gujja
▴ 30
Thank you so much!
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Hervé Pagès
15k
Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…
Answer: Trouble with detecting AS events using ASpediaFI
by
rbqlsrbqls56
• 0
Assuming you downloaded "Homo_sapiens.GRCh38.104.gtf" from the Ensembl website, the gene model contains reference chromosomes (chr1-22, X, …
Votes
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
DESeq2: likelihood ratio test interpretation, multifactor
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: GDCprepare of RNAseq counts produces error
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