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Fasta
•
reset
0
votes
16
replies
4.4k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.5 years ago
writetoroopali
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
6
votes
8
replies
2.7k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.1 years ago
Henrik Bengtsson
★ 2.4k
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
3
replies
1.4k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.3 years ago by
Michael Lawrence
★ 11k • written 5.3 years ago by
k.vitting.seerup
▴ 120
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Glubbdrubb
• 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Angel
▴ 40
1
vote
2
replies
3.1k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
kevin.debray
• 0
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
christinafragel
• 0
0
votes
2
replies
891
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.9 years ago by
joannew
• 0
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
fastabest
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.5 years ago
b.stielow
• 0
0
votes
1
reply
692
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.6 years ago
drew.neely
• 0
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.1 years ago by
Jeff Johnston
▴ 90 • written 8.1 years ago by
TimothéeFlutre
▴ 80
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.3 years ago by
Hervé Pagès
16k • written 8.5 years ago by
giuliobarth
• 0
0
votes
0
replies
636
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.7 years ago
Sonali Arora
▴ 390
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.6 years ago
achaillon
• 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
874
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.5 years ago
A
▴ 40
0
votes
0
replies
693
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.6 years ago
dh.heredero
▴ 10
1
vote
0
replies
822
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.7 years ago
Endre Sebestyén
▴ 70
26 results • Page
1 of 1
Recent ...
Replies
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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junhui.li11
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James W. MacDonald
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jeffrey.maurer
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Chris
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to
Leonard Goldstein
▴ 200
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