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Fasta
•
reset
0
votes
2
replies
897
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 3.9 years ago by
joannew
• 0
0
votes
0
replies
641
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.5 years ago
HELEN
• 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.7 years ago
HELEN
• 0
1
vote
0
replies
828
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.7 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
696
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.6 years ago
drew.neely
• 0
0
votes
0
replies
703
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.6 years ago
dh.heredero
▴ 10
6
votes
8
replies
2.8k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.4k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.3 years ago by
Michael Lawrence
★ 11k • written 5.3 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
christinafragel
• 0
0
votes
0
replies
878
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.5 years ago
A
▴ 40
0
votes
16
replies
4.4k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.5 years ago
writetoroopali
• 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.6 years ago
achaillon
• 0
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
Glubbdrubb
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.1k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
kevin.debray
• 0
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
fastabest
• 0
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.1 years ago by
Jeff Johnston
▴ 90 • written 8.1 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 2 days ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.3 years ago by
Hervé Pagès
16k • written 8.5 years ago by
giuliobarth
• 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr
fasta
updated 8.7 years ago by
Hervé Pagès
16k • written 8.7 years ago by
Angel
▴ 40
2
votes
0
replies
3.3k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.7 years ago
Sonali Arora
▴ 390
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.8 years ago by
xiaojing.wang
▴ 50 • written 8.8 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.5 years ago
b.stielow
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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