Showing : Fasta • reset
8
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14
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11k
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Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 6.9 years ago by • 0 • written 7.3 years ago by ▴ 50
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
16
replies
4.4k
views
Error while using buildindex for human genome
rsubread buildindex fasta alignment
5.5 years ago writetoroopali • 0
4
votes
3
replies
3.7k
views
a package for read.fasta
seqinr fasta
updated 8.7 years ago by 16k • written 8.7 years ago by ▴ 40
2
votes
0
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3.3k
views
News: Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub Gencode GFF3 FASTA News
8.7 years ago Sonali Arora ▴ 390
1
vote
2
replies
3.1k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings fasta R Call2
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
0
votes
5
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 2 days ago Henrik Bengtsson ★ 2.4k
6
votes
8
replies
2.8k
views
Ranges from a fasta file
biostrings fasta genomicranges granges
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 80
1
vote
2
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2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings fasta protein
updated 7.3 years ago by 65k • written 7.3 years ago by • 0
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart fasta
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
2
votes
4
replies
1.8k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 8.8 years ago by ▴ 50 • written 8.8 years ago by • 0
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome gzip fasta
updated 8.1 years ago by ▴ 90 • written 8.1 years ago by ▴ 80
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta fai vmatchpattern biostrings
updated 8.3 years ago by 16k • written 8.5 years ago by • 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges biostrings fasta protein readaastringset
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ★ 1.5k
3
votes
3
replies
1.4k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 120
2
votes
4
replies
1.3k
views
convert a sequence to Ranges object
iranges fasta split
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ★ 1.5k
0
votes
0
replies
1.0k
views
filter and trim large fasta/bam files
deep sequencing fasta bam trim
6.6 years ago achaillon • 0
0
votes
2
replies
897
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 3.9 years ago by • 0
0
votes
0
replies
878
views
Quantifying reporter expression to validate sequencing
alignment Fastq fasta
5.5 years ago A ▴ 40
1
vote
0
replies
828
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS mutation variant fasta
2.7 years ago Endre Sebestyén ▴ 70
0
votes
0
replies
703
views
Working with fasta files in sangerseqR
Fasta Ab1 Abif Scf
3.6 years ago dh.heredero ▴ 10
0
votes
1
reply
695
views
How to get similarity score between two genomes of different species
fasta multi-species
3.6 years ago drew.neely • 0
0
votes
0
replies
641
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
2.5 years ago HELEN • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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