Showing : GO.DB • reset
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db bioclite
9.0 years ago Steve Pederson ▴ 170
4
votes
2
replies
1.9k
views
mapIds to get GO terms
annotationdbi go.db
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 10
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
3
votes
2
replies
2.0k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.3 years ago by 25k • written 3.3 years ago by ★ 4.0k
2
votes
6
replies
4.2k
views
DiffBind installation doesn't work
diffbind go.db
9.0 years ago • updated 8.9 years ago Gary ▴ 20
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
2
votes
1
reply
931
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
2
votes
2
replies
1.0k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.0 years ago decppced • 0
2
votes
5
replies
262
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 25 days ago by 66k • written 27 days ago by • 0
2
votes
17
replies
1.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 50
2
votes
5
replies
1000
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 66k • written 4.9 years ago by • 0
2
votes
2
replies
983
views
Troubles installing GO.db
go.db
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 20
1
vote
0
replies
385
views
Typo in GO.db manual reference
GO.db
13 months ago RuBBiT0 ▴ 10
1
vote
2
replies
2.6k
views
Installation Error- GO.db
GO.db
updated 7.9 years ago by 66k • written 7.9 years ago by ▴ 10
1
vote
1
reply
1.7k
views
How to install old version of GO.db in R
GO.db R
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.1 years ago by 66k • written 7.1 years ago by • 0
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.5 years ago by 25k • written 5.5 years ago by ★ 1.0k
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.4 years ago by 66k • written 4.4 years ago by • 0
1
vote
2
replies
733
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
1
vote
2
replies
1.4k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
1
vote
1
reply
1.4k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
1
vote
2
replies
912
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.2 years ago MOHAMMAD • 0
1
vote
6
replies
1.9k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 40
1
vote
1
reply
2.0k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
23 months ago Lucía ▴ 10
1
vote
2
replies
931
views
GO.db for Bioconductor 3.17
GO.db devel
15 months ago Amanda D. Clark • 0
1
vote
6
replies
1.2k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.4 years ago by 66k • written 2.4 years ago by • 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.2 years ago by 66k • written 5.2 years ago by • 0
0
votes
3
replies
1.5k
views
GO.db installation error
GO go.db
7.6 years ago cananhas • 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
1
reply
1.2k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
18 months ago Chruut • 0
0
votes
2
replies
1.4k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 66k • written 3.8 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
Error attaching TIN
software error GO.db TIN
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
0
votes
0
replies
405
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
11 months ago RuBBiT0 ▴ 10
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.0 years ago Jenny Drnevich ★ 2.0k
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 66k • written 3.6 years ago by • 0
0
votes
8
replies
761
views
GOslim missing GO term
GO.db GOslim
5 months ago amanda • 0
0
votes
0
replies
2.4k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error GO.db
8.0 years ago christin.berlin • 0
0
votes
1
reply
700
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
0
votes
4
replies
1.4k
views
GO.db package can't be installed
install GO.db
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
0
votes
1
reply
1.3k
views
Gene Ontolology and Annotation
Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db
updated 8.4 years ago by ▴ 760 • written 8.4 years ago by • 0
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 9.0 years ago by 16k • written 9.1 years ago by ▴ 10
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
1
reply
1.7k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by ▴ 10
0
votes
1
reply
404
views
Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
votes
1
reply
932
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by 66k • written 2.6 years ago by • 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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