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GO.DB
•
reset
4
votes
2
replies
4.0k
views
Cannot load or update GO.db
GO.db
bioclite
9.8 years ago
Steve Pederson
▴ 170
4
votes
2
replies
2.3k
views
mapIds to get GO terms
annotationdbi
go.db
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
sisterdot
▴ 10
3
votes
2
replies
2.6k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db
AnnotationDbi
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
Guido Hooiveld
★ 4.1k
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 6.4 years ago by
apkmirrorproject
• 0 • written 6.4 years ago by
marcinjoachimiak
▴ 10
3
votes
1
reply
1.3k
views
Difference between enrichGO results and Enrichr website results
Pathways
GO.db
clusterProfiler
updated 7 months ago by
Guido Hooiveld
★ 4.1k • written 7 months ago by
adrip
▴ 10
3
votes
2
replies
1.0k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
max.neal
▴ 10
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
karl.stamm
▴ 10
2
votes
17
replies
2.8k
views
Problem installing package, version of dependency issue
AnnotationDbi
GO.db
updated 13 months ago by
Lluís Revilla Sancho
▴ 760 • written 13 months ago by
alexandre.blais
▴ 50
2
votes
6
replies
4.7k
views
DiffBind installation doesn't work
diffbind
go.db
9.7 years ago • updated 9.6 years ago
Gary
▴ 20
2
votes
2
replies
1.2k
views
Troubles installing GO.db
go.db
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Aurora
▴ 20
2
votes
2
replies
1.6k
views
GO.db source obo file?
gene ontology
gostats
go.db
ontologies
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
brismiller
• 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db
annota
org.Hs.eg.
GO.db
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
brunogiotti
• 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO
GO.db
3.8 years ago
decppced
• 0
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 4.0 years ago by
Basti
▴ 780 • written 4.0 years ago by
MOHAMMAD
• 0
2
votes
1
reply
3.1k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler
GO.db
2.7 years ago
Lucía
▴ 30
2
votes
5
replies
665
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
bandconductor
• 0
1
vote
6
replies
1.5k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db
versioning
updated 3.1 years ago by
James W. MacDonald
68k • written 3.1 years ago by
rebeliscu
• 0
1
vote
6
replies
2.5k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db
AnnotationDbi
updated 3.5 years ago by
Jacky
• 0 • written 3.5 years ago by
Guandong Shang
▴ 40
1
vote
1
reply
1.3k
views
GO.db: searching for "top" GO term for list of terms
GO
go.db
updated 6.5 years ago by
James W. MacDonald
68k • written 6.5 years ago by
TB18
• 0
1
vote
1
reply
1.8k
views
installing GO.bd for WGCNA
GO.db
WGCNA
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
VictoriaL
• 0
1
vote
2
replies
1.4k
views
GO.db for Bioconductor 3.17
GO.db
devel
2.0 years ago
Amanda D. Clark
• 0
1
vote
4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.1 years ago by
James W. MacDonald
68k • written 5.1 years ago by
C A
• 0
1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db
clusterprofiler
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Leonardo Collado Torres
★ 1.1k
1
vote
2
replies
2.8k
views
Installation Error- GO.db
GO.db
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
cpotter710
▴ 10
1
vote
1
reply
1.9k
views
How to install old version of GO.db in R
GO.db
R
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
animesh_10kuet
• 0
1
vote
10
replies
3.1k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.9 years ago by
James W. MacDonald
68k • written 7.9 years ago by
Angela
• 0
1
vote
0
replies
582
views
Typo in GO.db manual reference
GO.db
22 months ago
RuBBiT0
▴ 10
1
vote
5
replies
5.8k
views
can not able to install go.db
go.db
updated 8.2 years ago by
Martin Morgan
25k • written 8.3 years ago by
jarraya.amina.fst
• 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.9 years ago
MOHAMMAD
• 0
1
vote
2
replies
1.9k
views
Help installing clusterProfiler
clusterProfiler
DO.db
GO.db
lazy load fail
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
masaver
• 0
0
votes
1
reply
2.2k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo
GOSemSim
GO.db
4.7 years ago
Jenny Drnevich
★ 2.0k
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db
topGO
updated 4.3 years ago by
James W. MacDonald
68k • written 4.3 years ago by
fklirono
• 0
0
votes
1
reply
684
views
Which species does GO.db use
GO.db
annotationTools
updated 19 months ago by
Lluís Revilla Sancho
▴ 760 • written 19 months ago by
youngleel
• 0
0
votes
1
reply
921
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
yeluo
• 0
0
votes
4
replies
1.7k
views
GO.db package can't be installed
install
GO.db
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
Enrico
• 0
0
votes
1
reply
1.9k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
adrianna-christina
▴ 10
0
votes
1
reply
2.2k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
veerle
• 0
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.2k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.4 years ago by
James W. MacDonald
68k • written 3.4 years ago by
cmfield
• 0
0
votes
1
reply
1.3k
views
ViSEAGO
gene_ontology
GOID
ViSEAGO
GO.db
custom2GO
3.6 years ago
jabbar_campbell
• 0
0
votes
1
reply
3.0k
views
how to sort y-axis category of GO result
GO.db
clusterProfiler
dotplot
barplot
3.4 years ago
Yang
• 0
0
votes
2
replies
2.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.3 years ago
Chruut
• 0
0
votes
0
replies
639
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
20 months ago
RuBBiT0
▴ 10
0
votes
3
replies
1.7k
views
GO.db installation error
GO
go.db
8.4 years ago
cananhas
• 0
0
votes
1
reply
1.2k
views
I cannot install the package GO.db
GO.db
8.3 years ago
chisad
• 0
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db
WGCNA
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
s3462450
▴ 10
0
votes
3
replies
4.7k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor
R
go.db
annotationdbi
dependency
8.0 years ago
Sidi.Ma
• 0
0
votes
2
replies
1.7k
views
GO.db will not download
GO.db
8.0 years ago
MOD
• 0
0
votes
1
reply
1.8k
views
GO.db, pfma.db, KEGG.db
pfam
go.db
kegg.db
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
josefina.lascanomaillard
• 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error
go.db
7.0 years ago
matt.a.bennett25890
• 0
50 results • Page
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Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
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Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
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4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
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Suggesting changing the "reply-to" field to the mailing list address.
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