Showing : Network • reset
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.6 years ago by ▴ 40
8
votes
4
replies
6.9k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 9.6 years ago by ★ 3.0k • written 9.6 years ago by ▴ 180
7
votes
1
reply
3.4k
views
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
rnaseq network limma
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ▴ 250
7
votes
9
replies
3.7k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 15 months ago by ★ 3.0k • written 5.0 years ago by ▴ 10
5
votes
2
replies
4.1k
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by ▴ 30
5
votes
14
replies
4.8k
views
Connection Refused on port 9000 - RCytoscape
rcytoscape r network graphBAM object
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by ▴ 50
4
votes
3
replies
909
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 5.0 years ago by ★ 3.0k • written 5.0 years ago by ▴ 80
4
votes
2
replies
1.1k
views
iSEE - Custom Panel
Network GeneNetwork iSEE
updated 3.5 years ago by ★ 28k • written 3.5 years ago by • 0
3
votes
2
replies
5.0k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 23 months ago by ▴ 10 • written 3.7 years ago by ▴ 80
2
votes
6
replies
4.6k
views
Error running TOMplot in WGCNA package
wgcna network
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
2
votes
4
replies
1.8k
views
Case-control study using WGCNA
wgcna network rna-seq
4.4 years ago ag1805x ▴ 80
2
votes
1
reply
1.4k
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
2
votes
1
reply
788
views
WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 19 months ago by ▴ 50 • written 19 months ago by ▴ 10
2
votes
0
replies
508
views
Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
3.9 years ago hamza_karakurt ▴ 50
2
votes
5
replies
1.4k
views
runing NetBenchmark on my own datasets
software error network
updated 8.5 years ago by ▴ 20 • written 8.5 years ago by ▴ 40
1
vote
1
reply
1.5k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 7.9 years ago by ▴ 120 • written 7.9 years ago by ▴ 660
1
vote
1
reply
834
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 3 months ago by ▴ 20 • written 4 months ago by ▴ 90
1
vote
1
reply
1.5k
views
WGCNA gene clusters vs eigengenes
wgcna network coexpression eigengenes
updated 4.6 years ago by 50k • written 4.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
updated 6.5 years ago by ▴ 730 • written 6.6 years ago by ▴ 40
1
vote
2
replies
1.3k
views
Additional high-scoring subnetworks in BioNet
bionet network
updated 7.9 years ago by ▴ 120 • written 7.9 years ago by ▴ 660
1
vote
10
replies
2.0k
views
Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 17 months ago by • 0
1
vote
2
replies
4.0k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 250
1
vote
7
replies
2.7k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny network interactions
9.5 years ago pshannon ▴ 100
1
vote
1
reply
1.4k
views
WGCNA_ Eigengene and sample complications correlations
Network Network
updated 9.8 years ago by ★ 3.0k • written 9.8 years ago by ▴ 130
1
vote
2
replies
2.9k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
8.9 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.1k
views
JOB: Biostatistican
Microarray Genetics Proteomics Network Kidney Microarray Genetics Proteomics Network
20.6 years ago Robert Campanell ▴ 10
0
votes
0
replies
1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
852
views
B value cutoff in LIMMA
Network Cancer limma Network Cancer limma
18.1 years ago Gordon Smyth 50k
0
votes
0
replies
664
views
Problem downloading Bioconductor
Network Network
17.9 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
645
views
Greek characters and subscripts in network graphs
Network Rgraphviz Network Rgraphviz
17.4 years ago Martin Henry H. Stevens ▴ 10
0
votes
0
replies
1.1k
views
Biocore response to Affymetrix data format changes
Microarray GO Network Cancer cdf affy PROMISE Microarray GO Network Cancer cdf affy
20.8 years ago Kulp, David ▴ 20
0
votes
0
replies
1.1k
views
Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
11.7 years ago Seyed Ahmad Mousavi ▴ 10
0
votes
0
replies
750
views
no connection to biol
Network Network
18.2 years ago Francois Pepin ★ 1.3k
0
votes
3
replies
1.9k
views
Drawing network graphs (i.e. nodes and edges)
Network Network
updated 18.2 years ago by ▴ 360 • written 18.2 years ago by ▴ 170
0
votes
0
replies
1.2k
views
Affymetrix Software Development Conference Early Registration rat es - final days
SNP GO Network BEAT SNP GO Network BEAT
21.0 years ago DevNet ▴ 20
0
votes
0
replies
657
views
need a neural network package for microarray data analysis
Microarray Network Microarray Network
18.4 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
826
views
Bug in maNormNN
Microarray Normalization GO Visualization Network nnNorm Microarray Normalization GO
18.5 years ago Tarca, Adi ▴ 570
0
votes
1
reply
908
views
Re: Try to run a lots of chips: 32 bits vs 64 bits
Normalization GO Network Normalization GO Network
updated 21.2 years ago by ▴ 530 • written 21.2 years ago by ▴ 430
0
votes
0
replies
746
views
BioPAX/SBPAX import for MicroArray Analysis and Hypothesis Building
Microarray Network Microarray Network
11.9 years ago Oliver Ruebenacker ▴ 110
0
votes
0
replies
1.3k
views
BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
17.6 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
906
views
help with bayesian network
Network Bayesian Network Bayesian
18.6 years ago goldoni ▴ 10
0
votes
2
replies
906
views
KEGG analysis
Network Cancer Network Cancer
15.1 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
2.0k
views
vacancy postdoc or PhD in the Netherlands
Metabolomics Network Organism Metabolomics Network Organism
15.1 years ago Hendriks, M. ▴ 10
0
votes
2
replies
1.2k
views
Affymetrix MASv5 code & sample data
Network Network
updated 18.9 years ago by ★ 1.8k • written 18.9 years ago by ▴ 50
0
votes
3
replies
1.3k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 270
0
votes
0
replies
2.0k
views
Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
15.0 years ago Paul Hammer ▴ 220
0
votes
0
replies
615
views
Software Demo for Summer Research Grant
Network Network
14.9 years ago RICHARD SEGALL ▴ 10
0
votes
0
replies
1.0k
views
bioinformatics programmer position
Network Network
14.9 years ago Wall, Dennis Paul ▴ 80
0
votes
0
replies
624
views
Invitation to connect on LinkedIn
Network Network
14.7 years ago Lingsheng Dong ▴ 80
0
votes
0
replies
2.1k
views
Pathview question
Network convert pathview Network convert pathview
10.0 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards • All
Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Locations • All
Türkiye, 3 minutes ago
Ireland, 24 minutes ago
Japan, 1 hour ago
Canada, 2 hours ago
UPF, Barcelona, Spain, 2 hours ago
Traffic: 494 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6