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BioCAsia Virtual Meeting, 15-18 October 2020
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written 20 months ago by
Matthew Ritchie
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News:
New Bioconductor Community Advisory Board Members for 2021
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Matthew Ritchie
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Community engagement and outreach award
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shepherl
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SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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19 months ago
shepherl
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 18 months ago by
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Final List of Deprecated Packages for Bioc3.12
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19 months ago
shepherl
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BridgeDbR devel package upgraded to BridgeDb 3
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19 months ago
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Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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19 months ago
kayla.interdonato
140
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Project-wide Code of Conduct statement for Bioconductor
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Bioconductor
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19 months ago
Laurent Gatto
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News:
List of Deprecated Packages for Bioc3.12
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20 months ago • updated 19 months ago
shepherl
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19 months ago
shepherl
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20 months ago
shepherl
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ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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20 months ago
Johannes Rainer
★ 1.9k
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21 months ago
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James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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• 0 • written 22 months ago by
shepherl
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shepherl
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shepherl
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shepherl
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shepherl
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23 months ago
shepherl
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23 months ago
shepherl
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299
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23 months ago
shepherl
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23 months ago
shepherl
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23 months ago
shepherl
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23 months ago
kayla.interdonato
140
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2.1 years ago • updated 23 months ago
shepherl
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24 months ago
shepherl
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Bioconductor Technical Advisory Board Nominees, 2020
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Public Calendar of Events
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24 months ago
shepherl
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396
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ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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2.0 years ago
Johannes Rainer
★ 1.9k
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384
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2.0 years ago
kayla.interdonato
140
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3
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396
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Final List of Deprecated Packages for Bioc3.11
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updated 2.0 years ago by
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140 • written 2.1 years ago by
shepherl
3.1k
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276
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
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2.0 years ago
kayla.interdonato
140
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270
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Ensembl 100 has been released
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2.0 years ago
Thomas Maurel
▴ 790
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285
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Bioconductor 3.11 is Released!
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2.0 years ago
shepherl
3.1k
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4
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469
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BridgeDb build fails due to website unavailability
bridgedbr
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2.4 years ago • updated 2.1 years ago
egon.willighagen
▴ 10
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318
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News:
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2.1 years ago
shepherl
3.1k
10
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2.1k
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News:
Professor James Taylor
in memoriam
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2.1 years ago
Martin Morgan
25k
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296
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
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2.1 years ago
shepherl
3.1k
2
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321
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News:
Bioconductor Community Advisory Board Members
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2.1 years ago
Matthew Ritchie
▴ 1000
0
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1
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344
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News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
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deadline
News
2.2 years ago • updated 2.1 years ago
shepherl
3.1k
0
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0
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254
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News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
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2.1 years ago
shepherl
3.1k
0
votes
0
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237
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News:
Bioconductor Release 3.10 Code Freeze Deadline
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bioconductor
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2.1 years ago
shepherl
3.1k
0
votes
0
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231
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News:
Bioconductor 3.11 db0s are available
annotation
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news
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2.1 years ago
kayla.interdonato
140
1
vote
0
replies
239
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News:
Importing alevin inferential replicates into R with tximport
tximport
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2.1 years ago
Michael Love
36k
1
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0
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292
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News:
Bioconductor Release 3.11 Schedule Posted
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2.2 years ago
shepherl
3.1k
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Comment: rtracklayer S.h
by
gibran
• 0
Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…
Comment: DESeq2, Calculate the size factor by using median-of-ratio
by
KEREN
• 0
Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
chrarnold
• 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…
Votes
Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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