Showing : Proteomics • reset
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Deseq2 with replicate mean and variance information
deseq2 deseq differential analysis proteomics
7.6 years ago blehtine • 0
0
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4
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2.1k
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Cannot install and load MSstats package
proteomics massspectrometry msstats
updated 7.6 years ago by 1.6k • written 7.6 years ago by • 0
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0
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News: Computational Mass Spectrometry Track at ISMB 2018
proteomics ISMB News
7.6 years ago mnchoi67 ▴ 40
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4
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1.7k
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Adding annotation to MSnSet
bioconductor proteomics msnset
updated 7.7 years ago by 1.6k • written 7.7 years ago by ▴ 20
3
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2
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2.3k
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DEP: Grouping Samples for missing value imputation
DEP missing value imputation proteomics rforproteomics
8.0 years ago • updated 7.8 years ago alex.gos90 ▴ 10
0
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5
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2.1k
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Trouble using addMarkers from pRoloc on my own dataset
proloc proteomics msnset
7.8 years ago moldach ▴ 20
2
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0
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
news proteomics course training msstats News
7.8 years ago mnchoi67 ▴ 40
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0
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
7.8 years ago mnchoi67 ▴ 40
1
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1
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2.4k
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Job: junior level position in proteomics/data science
proteomics machine learning git docker Job
updated 7.9 years ago by • 0 • written 8.1 years ago by ▴ 70
2
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0
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1.4k
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mapping protein PTM data
proteomics
8.0 years ago petyuk ▴ 70
5
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3
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2.2k
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Strong upwards correlation between log fold change and average log expression in MD plot of Limma
limma proteomics
updated 8.0 years ago by 53k • written 8.0 years ago by • 0
3
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4
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2.7k
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Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa reactome.db reactome proteomics uniprot accessions
updated 8.1 years ago by ▴ 150 • written 8.1 years ago by ▴ 10
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Job: PhD opportunity in St Andrews (Proteomic and Genomic analysis of Oesophageal Cancers)
proteomics cancer genomics Job
8.2 years ago Andy Lynch ▴ 120
1
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1
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1.7k
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
8.4 years ago • updated 8.3 years ago Laurent Gatto 1.6k
4
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9
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3.0k
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Limma is doing the right way to calculate the fold change?
limma proteomics
updated 8.4 years ago by 1.6k • written 8.4 years ago by ▴ 30
0
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0
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1.7k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
8.7 years ago Laurent Gatto 1.6k
0
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2
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1.9k
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using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 9.1 years ago by 53k • written 9.1 years ago by • 0
2
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7
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2.2k
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I get nothing in my up and down regulated genes
limma proteomics label free
9.3 years ago • updated 9.2 years ago Nemo ▴ 80
2
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4
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1.9k
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how to find up regulated proteins from a label free
deseq2 proteomics label free
updated 9.3 years ago by 1.6k • written 9.3 years ago by ▴ 80
0
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0
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2.1k
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Differential protein abundance testing using emPAI values?
proteomics limma
9.3 years ago Jenny Drnevich ★ 2.0k
0
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9
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2.4k
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RforProteomics workflow troubleshooting
proteomics
9.4 years ago yockpingchow • 0
0
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1
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2.0k
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Using Limma for analyzing proteomics data
Limma Proteomics
updated 9.4 years ago by 1.6k • written 9.4 years ago by • 0
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0
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1.2k
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Protein structure prediction
proteomics
9.6 years ago ashamscsoft • 0
1
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1
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5.9k
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 9.7 years ago by 1.6k • written 9.7 years ago by • 0
0
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2
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2.0k
views
How to normalized SWATH proteomic data?
proteomics SWATH
updated 9.7 years ago by 1.6k • written 9.8 years ago by • 0
1
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1
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2.0k
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GenomeViz
Proteomics genomes Proteomics genomes
updated 9.8 years ago by • 0 • written 20.8 years ago by ▴ 80
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0
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1.8k
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.8 years ago Olga Vitek ▴ 40
1
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8
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2.6k
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DESEQ2 and continuous data
proteomics deseq2
9.8 years ago carandres74 • 0
0
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3
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2.7k
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Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
9.8 years ago Titan • 0
2
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5
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2.4k
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NA coefficients values for samples with all zeros
limmagui proteomics
10.0 years ago vedran.franke • 0
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0
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News: IPI numbers in annotation packages
annotation proteomics uniprot.ws News
10.1 years ago James W. MacDonald 68k
1
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3
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1.5k
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a good pipline for proteomics
proteomics r
updated 10.1 years ago by 1.6k • written 10.1 years ago by ▴ 80
8
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2
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3.7k
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Statistical analysis of Spectral count data : edgeR, limma or others ?
spectral counts proteomics limma edger deseq
updated 10.4 years ago by 53k • written 10.4 years ago by ▴ 70
1
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5
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3.9k
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Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 10.4 years ago by • 0 • written 16.1 years ago by ▴ 60
8
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0
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Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
10.4 years ago Martin Morgan 25k
0
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2
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2.3k
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Job: Postdoc bioinformatics in proteomics
proteomics job bioinformatics Netherlands Job
10.4 years ago b.nota ▴ 370
0
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0
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1.8k
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News: 4 days left to register for a short course on computational proteomics
proteomics news course massspectrometry News
10.7 years ago Olga Vitek ▴ 40
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2.5k
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Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
10.7 years ago Feng Hong • 0
0
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0
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Job: Research Data Technician, Cambridge, UK
proteomics massspectrometry Job
10.8 years ago Laurent Gatto 1.6k
25
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9
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8.4k
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voom for spectral counts
limma voom proteomics spectral counts massspectrometry
updated 10.8 years ago by 53k • written 10.8 years ago by ▴ 40
2
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1
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2.1k
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News: Announcing a short course in computational and statistical proteomics
proteomics massspectrometry R News
10.8 years ago vitek.olga ▴ 20
1
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9
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3.2k
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msnbase error when adding identification data
msnbase proteomics itraq
updated 10.8 years ago by 1.6k • written 10.8 years ago by • 0
1
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3
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2.1k
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Isobar - generating IBSpectra object
isobar mzid mgf proteomics itraq
updated 10.8 years ago by 1.6k • written 10.8 years ago by • 0
0
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16
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3.0k
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liimma and Across Array Normalisation
Microarray Proteomics Microarray Proteomics
updated 11.8 years ago by 53k • written 11.8 years ago by ▴ 130
0
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3
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2.6k
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limma and Volcano Plots
Microarray Proteomics Cancer PROcess Microarray Proteomics Cancer PROcess
updated 11.8 years ago by 53k • written 11.8 years ago by ▴ 130
1
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3
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6.0k
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EdgeR for proteomics data
Proteomics Normalization edgeR Proteomics Normalization edgeR
updated 3.1 years ago by • 0 • written 11.8 years ago by ▴ 10
0
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0
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1.3k
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Retrieve GO terms for unanontaded organism and do enrichment by myself
Proteomics GO Organism Proteomics GO Organism
12.0 years ago Ricardo Silva ▴ 110
0
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0
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1.4k
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enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
12.1 years ago Pekka Kohonen ▴ 190
0
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0
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4.6k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.1 years ago Dan Tenenbaum ★ 8.2k
0
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0
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1.7k
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Bioinformatics Facility Director Position at UC Riverside
Proteomics Infrastructure Proteomics Infrastructure
12.1 years ago Thomas Girke ★ 1.7k
235 results • Page 3 of 5
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Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to shepherl 4.2k
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